Health Economic Simulation Modeling and Decision Analysis

Documentation for package ‘hesim’ version 0.5.4

Help Pages

-- A --

apply_rr	Apply relative risks to transition probability matrices
as.data.table.input_mats	Input matrices for a statistical model
as.data.table.tparams_transprobs	Coerce to 'data.table'
as_array3	Convert between 2D tabular objects and 3D arrays
as_pfs_os	Convert multi-state data to PFS and OS data
as_tbl2	Convert between 2D tabular objects and 3D arrays
autoplot.stateprobs	Plot state probabilities
autoplot.survival	Plot survival curves

-- B --

beta_rng

Random number generation distributions

-- C --

ce	A cost-effectiveness object
cea	Cost-effectiveness analysis
cea.ce	Cost-effectiveness analysis
cea.default	Cost-effectiveness analysis
cea_pw	Cost-effectiveness analysis
cea_pw.ce	Cost-effectiveness analysis
cea_pw.default	Cost-effectiveness analysis
CohortDtstm	Cohort discrete time state transition model
CohortDtstmTrans	Transitions for a cohort discrete time state transition model
costs	Costs object
create_CohortDtstm	Create 'CohortDtstm' object
create_CohortDtstm.model_def	Create 'CohortDtstm' object
create_CohortDtstmTrans	Create 'CohortDtstmTrans' object
create_CohortDtstmTrans.msm	Create 'CohortDtstmTrans' object
create_CohortDtstmTrans.multinom_list	Create 'CohortDtstmTrans' object
create_CohortDtstmTrans.params_mlogit_list	Create 'CohortDtstmTrans' object
create_IndivCtstmTrans	Create 'IndivCtstmTrans' object
create_IndivCtstmTrans.flexsurvreg	Create 'IndivCtstmTrans' object
create_IndivCtstmTrans.flexsurvreg_list	Create 'IndivCtstmTrans' object
create_IndivCtstmTrans.params_surv	Create 'IndivCtstmTrans' object
create_IndivCtstmTrans.params_surv_list	Create 'IndivCtstmTrans' object
create_params	Create a parameter object from a fitted model
create_params.flexsurvreg	Create a parameter object from a fitted model
create_params.flexsurvreg_list	Create a parameter object from a fitted model
create_params.lm	Create a parameter object from a fitted model
create_params.multinom	Create a parameter object from a fitted model
create_params.multinom_list	Create a parameter object from a fitted model
create_params.partsurvfit	Create a parameter object from a fitted model
create_PsmCurves	Create 'PsmCurves' object
create_PsmCurves.flexsurvreg_list	Create 'PsmCurves' object
create_PsmCurves.params_surv_list	Create 'PsmCurves' object
create_StateVals	Create a 'StateVals' object
create_StateVals.lm	Create a 'StateVals' object
create_StateVals.stateval_tbl	Create a 'StateVals' object
create_trans_dt	Create a data table of health state transitions
custom	Random number generation distributions

-- D --

define_model	Define and evaluate model expression
define_rng	Define and evaluate random number generation expressions
define_tparams	Define and evaluate transformed parameter expressions
dirichlet_rng	Random number generation distributions
disprog	Disease progression object

-- E --

eval_model	Define and evaluate model expression
eval_rng	Define and evaluate random number generation expressions
eval_tparams	Define and evaluate transformed parameter expressions
expand.hesim_data	Expand hesim_data
expmat	Matrix exponential

-- F --

fast_rgengamma	Random generation for generalized gamma distribution
fixed	Random number generation distributions
flexsurvreg_list	List of 'flexsurvreg' objects
format.icer	Incremental cost-effectiveness ratio
format.summary.ce	Summary method for cost-effectiveness object

-- G --

gamma_rng	Random number generation distributions
get_labels	Get value labels

-- H --

hesim_data

Data for health economic simulation modeling

-- I --

icer	Incremental cost-effectiveness ratio
incr_effect	Incremental treatment effect
IndivCtstm	Individual-level continuous time state transition model
IndivCtstmTrans	Transitions for an individual-level continuous time state transition model
input_mats	Input matrices for a statistical model

-- L --

lognormal_rng

Random number generation distributions

-- M --

mom_beta	Method of moments for beta distribution
mom_gamma	Method of moments for gamma distribution
mstate3_exdata	Example data for a reversible 3-state multi-state model
multinom3_exdata	Example data for a 3-state multinomial model
multinom_list	List of 'multinom' objects
multi_normal_rng	Random number generation distributions

-- N --

normal_rng

Random number generation distributions

-- O --

onc3	Multi-state oncology data for 3-state model
onc3p	Multi-state panel oncology data for 3-state model

-- P --

params	Parameter object
params_lm	Parameters of a linear model
params_mlogit	Parameters of a multinomial logit model
params_mlogit_list	Parameters of a list of multinomial logit models
params_surv	Parameters of a survival model
params_surv_list	Parameters of a list of survival models
plot_ceac	Plot cost-effectiveness acceptability curve
plot_ceac.cea	Plot cost-effectiveness acceptability curve
plot_ceac.cea_pw	Plot cost-effectiveness acceptability curve
plot_ceaf	Plot cost-effectiveness acceptability frontier
plot_ceplane	Plot cost-effectiveness plane
plot_evpi	Plot expected value of perfect information
print.eval_rng	Summarize 'eval_rng' object
print.input_mats	Input matrices for a statistical model
print.params_mlogit	Parameters of a multinomial logit model
print.params_surv	Parameters of a survival model
print.tparams_mean	Summarize 'tparams_mean' object
print.tparams_transprobs	Transition probabilities
Psm	N-state partitioned survival model
psm4_exdata	Example data for a 4-state partitioned survival model
PsmCurves	Partitioned survival curves

-- Q --

qalys	Quality-adjusted life-years object
qmatrix.data.frame	Transition intensity matrix from tabular object
qmatrix.data.table	Transition intensity matrix from tabular object
qmatrix.matrix	Transition intensity matrix from tabular object
qmatrix.msm	Transition intensity matrix from 'msm' object

-- R --

rcat	Random generation for categorical distribution
rdirichlet_mat	Random generation for multiple Dirichlet distributions
rng_distributions	Random number generation distributions
rpwexp	Random generation for piecewise exponential distribution

-- S --

set_labels	Set value labels
sim_costs	Expected values from state probabilities
sim_ev	Expected values from state probabilities
sim_ev.stateprobs	Expected values from state probabilities
sim_qalys	Expected values from state probabilities
sim_stateprobs.survival	Simulate state probabilities from survival curves
stateprobs	State probability object
StateVals	Model for state values
stateval_tbl	Table to store state value parameters
summary.ce	Summary method for cost-effectiveness object
summary.eval_rng	Summarize 'eval_rng' object
summary.params	Summarize parameter objects
summary.params_lm	Summarize parameter objects
summary.params_mlogit	Summarize parameter objects
summary.params_mlogit_list	Summarize parameter objects
summary.params_surv	Summarize parameter objects
summary.params_surv_list	Summarize parameter objects
summary.tparams_mean	Summarize 'tparams_mean' object
summary.tparams_transprobs	Summarize 'tparams_transprobs' object
summary.tpmatrix	Summarize transition probability matrix
survival	Survival object
surv_quantile	Survival quantiles

-- T --

time_intervals	Time intervals
tparams	Transformed parameter object
tparams_mean	Predicted means
tparams_transprobs	Transition probabilities
tparams_transprobs.array	Transition probabilities
tparams_transprobs.data.frame	Transition probabilities
tparams_transprobs.data.table	Transition probabilities
tparams_transprobs.tpmatrix	Transition probabilities
tpmatrix	Transition probability matrix
tpmatrix_id	Transition probability matrix IDs
tpmatrix_names	Names for elements of a transition probability matrix

-- U --

uniform_rng

Random number generation distributions