| kmer-package | Fast K-mer Counting and Clustering for Biological Sequence Analysis. |
| cluster | Divisive k-means clustering. |
| kcount | K-mer counting. |
| kdistance | K-mer distance matrix computation. |
| kmer | Fast K-mer Counting and Clustering for Biological Sequence Analysis. |
| mbed | Convert sequences to vectors of distances to a subset of seed sequences. |
| otu | Cluster sequences into operational taxonomic units. |