Inferring Chromatin Interaction Modules from 3C-Based Data

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Documentation for package ‘HiCociety’ version 0.1.38

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add_Genes Add gene information
calculate_avg_count Calculate Average Count within 5-pixel Padding
check_package Check if a package is installed
ConnectivityDiff Connectivity difference between two conditions
getContactFrequency Get contact Frequency
getContactProbability Contact probability
getElbowPoint Estimation of elbow point from J-shaped-curve
get_all_chr_names Retrieve chromosome names from .hic file
get_txdb All available Txdb
hic2community Create module objects from the Hi-C data
hic2network HiC to network data format
visualizeModule Visualization of module