f7064f0d759e997f7019e667e0019e1b *DESCRIPTION
1c2e24ac27e579333ccb54dd6a782e59 *LICENSE
bd6306e497a2ae31d2e886c5c2ac9322 *NAMESPACE
77c8a1c028808304f1dec3d5f4ed1cda *NEWS.md
4102f6e9690287854d5acdd6f9ecf248 *R/classification.R
98472b71db94287a6250f3c13c91c621 *R/covariance.R
885b80b25129387ff0fbd3e7657c58ea *R/data-class.R
153094c710be85c72f6aee03babd77ef *R/effects.R
fa2a7e3a5afe024492333319c1cf3adf *R/empirical.R
b7570236e6612524ee7afb54c475c97a *R/equivalence.R
017691c651d0b498ec6fec2a71468d7d *R/export.R
0596ce73d9e33f48c2311c67fb783c58 *R/harmonize.R
7cfce395db3b397db69c16271163898d *R/integration.R
f13d02a5a2c78a3549822de329c6def1 *R/intervals.R
df3e5e08d7aba582b1c12b04b528c09a *R/io.R
ad65f8752b7353c0ce89f2c79057942b *R/orientation.R
84ae6c622d2b1acafe4b13f66f60f528 *R/package.R
9450301d106dbfa3db21361fa0c7f6b4 *R/pathway.R
88d3b09c573c854d44d625dcef3d29e7 *R/plots.R
6b14cdb9e91976bd33dbc7efc2906525 *R/simulate.R
3c63db9e8872f1c0d0651328d043731b *R/trend.R
b0a214ecd9ebf0dfa1082d0b8898a5f2 *R/utils.R
e26c55638d118a3a1d9709cd253a552c *R/workflow.R
0242d2ddc38c8c25736208d1dcc55062 *README.md
85d8f399f83a3f57d4a569787a4c4f3c *inst/CITATION
4749992519a78f2fce8f38258cd65a7f *inst/WORDLIST
86ea3aec92e607601da9b590c1c74b49 *inst/extdata/assay_template.csv
5f9419dbecfe14c89d3d17ca7a546b3a *inst/extdata/entity_mapping_template.csv
8a6fb5b3f06f8f814f35a51b8943877e *inst/extdata/metadata_template.csv
c83423d495f45c486260d550cd65650d *inst/extdata/pathway_mapping_template.csv
e8bf8d4d64cf9e7fcd039aea8c9b9764 *inst/extdata/summary_effects_template.csv
578945e0aebae777ff8e15fc0abb762d *inst/methods/DEVELOPMENT_CHECKLIST.md
95050c7258af147ead50b316dd89ad9b *inst/methods/INPUT_OUTPUT_SPEC.md
1045555a64398760caa6dcb5eb88946e *inst/methods/METHODS.md
53e53be7a4862ac8b677ba339988cf56 *inst/release/ORIGINAL_V0.2.2_ARCHIVE_SHA256.txt
f96d919296d39212f35e3ca7aafc7c99 *inst/validation/REAL_DATA_VALIDATION.md
5e15568ed7d3fda709b4b30431e51220 *inst/validation/VALIDATION_METRICS.md
ad6306efc12b5631beed5b32d67d32c3 *inst/validation/run_confirmatory_validation.R
1a0d34d4be9661eb8b5b2125432e9f0e *inst/validation/run_robust_calibration.R
71c06d6dcb1d66648944749f7dc01a57 *inst/validation/run_simulation_benchmark.R
62f50686c91036182e48617e64105540 *inst/validation/semi_synthetic_template.R
9a778d5bd1d78fb4b96d23dced25e24e *inst/validation/simulation_grid.R
7abceff99a83684ef0431c0e7e5ad0e5 *man/OmicsBraid-package.Rd
7a5880bf38b9e914c813c48dd22433b4 *man/as_omics_braid_data.Rd
33dbd94531bd6d289d7551fd8b51070e *man/bootstrap_consensus_intervals.Rd
5ea5d196cc8f2218d2bfba0c362d3d59 *man/bootstrap_effect_covariance.Rd
1b0f64faea83344249e9d6d63b5d95ec *man/bootstrap_effect_intervals.Rd
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1947ac82f91d0ee64a7676f5b6528d8b *man/classify_braids.Rd
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c13eb122ffdcd6c543851f6d63db31a5 *man/estimate_effects.Rd
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90aed27e4604ee36e1d1975021a3bbcd *man/orient_omics.Rd
24c888b2b9e100f02c6166e01cac330e *man/plot_braid_heatmap.Rd
4d3092ac9b1f1318d97194470be34c01 *man/plot_concordance_map.Rd
9c8f6bfd368b4d7a5452dc2d010a9e85 *man/plot_effect_braid.Rd
a301139aaa31cf6f08499a0572d0ac1e *man/plot_evidence_forest.Rd
ed7af70b32a27e8a9a5acee159c52abf *man/read_omics_braid.Rd
d534bb3f59f0918976d49786f77cd4de *man/run_omics_braid.Rd
8e0739fb9e5a3440419805f48f2ddb73 *man/run_omics_braid_summary.Rd
41f30b220884b1631ce5130a9df18193 *man/score_pathways.Rd
5ece63afc8e714204d70997c08e33f03 *man/simulate_braid_data.Rd
ce9f46437a8d5abef62d9045933da6a9 *man/test_braid_trend.Rd
7ec40fbdbf8866489dba6ab275fbea7a *man/test_equivalence.Rd
d3cc5ca59f768307e7e74ca06ea7761c *man/validate_omics_braid_data.Rd
2935af3551beb3caa78390ef4cdb182f *man/write_omics_braid.Rd
998ec1ea34a6dd52582cc02841f4e66a *tests/testthat.R
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42ade99008740ca13e67b969172a35a7 *tests/testthat/test-orientation.R
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32694aac5a7f58ca4190558e2c96d064 *tests/testthat/test-regression-api-fixes.R
394294fc7e80a4ee2c58583667a694cf *tests/testthat/test-simulation.R
754b5fb8fed6192c68377db5cc20df1e *tests/testthat/test-summary.R
61e7bd635f34faa092015d9bac4d8046 *tests/testthat/test-trend-classification.R
