CRAN Package Check Results for Package CohortCharacteristics

Last updated on 2026-03-20 12:54:53 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1.1	6.80	838.09	844.89	ERROR
r-devel-linux-x86_64-debian-gcc	1.1.1	5.62	567.26	572.88	ERROR
r-devel-linux-x86_64-fedora-clang	1.1.1	12.00	1308.91	1320.91	ERROR
r-devel-linux-x86_64-fedora-gcc	1.1.1	12.00	1413.06	1425.06	ERROR
r-devel-macos-arm64	1.1.1	2.00	134.00	136.00	OK
r-devel-windows-x86_64	1.1.1	9.00	529.00	538.00	ERROR
r-patched-linux-x86_64	1.1.1	7.36	792.36	799.72	ERROR
r-release-linux-x86_64	1.1.1	5.28	832.23	837.51	OK
r-release-macos-arm64	1.1.1	2.00	136.00	138.00	OK
r-release-macos-x86_64	1.1.1	5.00	454.00	459.00	OK
r-release-windows-x86_64	1.1.1	9.00	530.00	539.00	OK
r-oldrel-macos-arm64	1.1.1	2.00	135.00	137.00	NOTE
r-oldrel-macos-x86_64	1.1.1	5.00	622.00	627.00	WARN
r-oldrel-windows-x86_64	1.1.1	12.00	769.00	781.00	ERROR

Check Details

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/1s] Running ‘testthat.R’ [523s/340s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-19 16:52:10.484962 > test-plotCohortTiming.R: v Summary finished, at 2026-03-19 16:52:10.733767 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-19 16:52:20.915232 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-19 16:52:21.072269 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 16:54:51.030672 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 16:54:51.568077 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 16:55:02.65471 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 16:55:03.771298 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising data > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x42) [0x7f7cbea27ef2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x1f) [0x7f7cbea2d4ef] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0xac) [0x7f7cbee1276c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x2aa) [0x7f7cbedf379a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7f7cbfa80d27] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x6a9) [0x7f7cbfa809b9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x38) [0x7f7cbfa7f998] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x70c) [0x7f7cbedf328c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7f7cbedf2c66] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7f7cbee09035] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7f7cbee08f5b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x561) [0x7f7cbf75fa61] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x486) [0x7f7cbf760856] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(+0x23e7942) [0x7f7cbf7e7942] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x89) [0x7f7cbf762f79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x186) [0x7f7cbf763316] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x104) [0x7f7cbf7636f4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7f7cbf775ffe] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x650) [0x7f7cbddee5d0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x101) [0x7f7cbde5db31] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xfb393) [0x7f7cdb6fb393] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14b3f0) [0x7f7cdb74b3f0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x26e) [0x7f7cdb733a7e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d530) [0x7f7cdb74d530] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138f12) [0x7f7cdb738f12] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d530) [0x7f7cdb74d530] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138f12) [0x7f7cdb738f12] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so(+0xb5e3) [0x7f7cc9a5f5e3] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xf9353) [0x7f7cdb6f9353] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1563ae) [0x7f7cdb7563ae] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15546b) [0x7f7cdb75546b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b633) [0x7f7cdb73b633] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(R_execMethod+0x2cb) [0x7f7cdb753bdb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/library/methods/libs/methods.so(+0x458b) [0x7f7cd868c58b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ffaa) [0x7f7cdb79ffaa] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b4ed) [0x7f7cdb73b4ed] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ce15) [0x7f7cdb79ce15] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ce15) [0x7f7cdb79ce15] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cf19) [0x7f7cdb79cf19] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1563ae) [0x7f7cdb7563ae] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15546b) [0x7f7cdb75546b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157818) [0x7f7cdb757818] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157bf8) [0x7f7cdb757bf8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x42) [0x7f7cbea27ef2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x1f) [0x7f7cbea2d4ef] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0xac) [0x7f7cbee1276c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x2aa) [0x7f7cbedf379a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7f7cbfa80d27] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x6a9) [0x7f7cbfa809b9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x38) [0x7f7cbfa7f998] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x70c) [0x7f7cbedf328c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7f7cbedf2c66] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7f7cbfa7f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7f7cbedf3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7f7cbee09035] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7f7cbee08f5b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x561) [0x7f7cbf75fa61] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x486) [0x7f7cbf760856] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(+0x23e7942) [0x7f7cbf7e7942] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x89) [0x7f7cbf762f79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x186) [0x7f7cbf763316] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x104) [0x7f7cbf7636f4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7f7cbf775ffe] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x650) [0x7f7cbddee5d0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x101) [0x7f7cbde5db31] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xfb393) [0x7f7cdb6fb393] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14b3f0) [0x7f7cdb74b3f0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x26e) [0x7f7cdb733a7e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d530) [0x7f7cdb74d530] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138f12) [0x7f7cdb738f12] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1344b4) [0x7f7cdb7344b4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d530) [0x7f7cdb74d530] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138f12) [0x7f7cdb738f12] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so(+0xb5e3) [0x7f7cc9a5f5e3] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xf9353) [0x7f7cdb6f9353] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1563ae) [0x7f7cdb7563ae] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15546b) [0x7f7cdb75546b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b633) [0x7f7cdb73b633] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(R_execMethod+0x2cb) [0x7f7cdb753bdb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/library/methods/libs/methods.so(+0x458b) [0x7f7cd868c58b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ffaa) [0x7f7cdb79ffaa] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b4ed) [0x7f7cdb73b4ed] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ce15) [0x7f7cdb79ce15] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19ce15) [0x7f7cdb79ce15] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134bd6) [0x7f7cdb734bd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d4f2) [0x7f7cdb79d4f2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cf19) [0x7f7cdb79cf19] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19da4e) [0x7f7cdb79da4e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13c0ac) [0x7f7cdb73c0ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1563ae) [0x7f7cdb7563ae] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15546b) [0x7f7cdb75546b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7f7cdb733be0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157818) [0x7f7cdb757818] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1502ac) [0x7f7cdb7502ac] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7f7cdb733e06] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157bf8) [0x7f7cdb757bf8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13be2b) [0x7f7cdb73be2b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13422c) [0x7f7cdb73422c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7f7cdb7339b5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150da9) [0x7f7cdb750da9] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [362s/281s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-19 13:10:25.050205 > test-plotCohortTiming.R: v Summary finished, at 2026-03-19 13:10:25.349464 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-19 13:10:34.316277 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-19 13:10:34.550892 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 13:12:40.363045 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 13:12:40.804138 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 13:12:50.443098 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 13:12:51.19422 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f1271c9c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f1271c9c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f1271c9f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f1271fb2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f12711073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f1272897c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f1272899966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f1272899f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f1271f9fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f1271f9fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f1271fa04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f1271fa06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f1272691a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f127269218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f1272692847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f127266d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f1272671eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f1272694975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f1272694a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f12713759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f12713f1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f128e308d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147720) [0x7f128e347720] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f128e357b1a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158545) [0x7f128e358545] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1504b4) [0x7f128e3504b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158545) [0x7f128e358545] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1504b4) [0x7f128e3504b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f12784287f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f128e307053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15cbad) [0x7f128e35cbad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b4fc) [0x7f128e35b4fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c15b) [0x7f128e34c15b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f128e35aa69] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f127c87dba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8c72) [0x7f128e3a8c72] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x151257) [0x7f128e351257] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6b87) [0x7f128e3a6b87] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6b87) [0x7f128e3a6b87] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6d19) [0x7f128e3a6d19] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15cbad) [0x7f128e35cbad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b4fc) [0x7f128e35b4fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e0bf) [0x7f128e35e0bf] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e584) [0x7f128e35e584] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f1271c9c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f1271c9c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f1271c9f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f1271fb2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f12711073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f1272897c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f1272899966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f1272899f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f1271f9fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f1271f9fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f12728aaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f1271f9fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f1271fa04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f1271fa06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f1272691a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f127269218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f1272692847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f127266d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f1272671eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f1272694975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f1272694a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f12713759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f12713f1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f128e308d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147720) [0x7f128e347720] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f128e357b1a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158545) [0x7f128e358545] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1504b4) [0x7f128e3504b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158234) [0x7f128e358234] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158545) [0x7f128e358545] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1504b4) [0x7f128e3504b4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f12784287f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f128e307053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15cbad) [0x7f128e35cbad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b4fc) [0x7f128e35b4fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c15b) [0x7f128e34c15b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f128e35aa69] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f127c87dba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8c72) [0x7f128e3a8c72] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x151257) [0x7f128e351257] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6b87) [0x7f128e3a6b87] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6b87) [0x7f128e3a6b87] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b179) [0x7f128e35b179] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6603) [0x7f128e3a6603] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6d19) [0x7f128e3a6d19] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6f7c) [0x7f128e3a6f7c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14be4f) [0x7f128e34be4f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15cbad) [0x7f128e35cbad] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b4fc) [0x7f128e35b4fc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f128e357cf7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e0bf) [0x7f128e35e0bf] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15991f) [0x7f128e35991f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a708) [0x7f128e35a708] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f128e357a4a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e584) [0x7f128e35e584] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c064) [0x7f128e34c064] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15752b) [0x7f128e35752b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f128e35790b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [14m/11m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-15 19:00:49.871974 > test-plotCohortTiming.R: v Summary finished, at 2026-03-15 19:00:50.882409 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-15 19:01:05.478079 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-15 19:01:05.729515 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-summariseCharacteristics.R: i adding demographics columns > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:26.86481 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:28.218159 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:51.705817 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:53.666439 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [15m/22m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-14 19:55:04.387553 > test-plotCohortTiming.R: v Summary finished, at 2026-03-14 19:55:05.876387 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-14 19:55:47.232282 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-14 19:55:47.579412 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:03.070329 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:06.493119 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:46.521651 > test-summariseCohortTiming.R: ======>------------------------ 1/5 group-strata combinations @ 2026-03-14 20... > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: ============>------------------ 2/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: ==============================> 5/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:50.528963 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [263s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-17 07:26:53.153819 > test-plotCohortTiming.R: v Summary finished, at 2026-03-17 07:26:53.384818 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-17 07:27:02.251341 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-17 07:27:02.36919 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-17 07:29:01.206281 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-17 07:29:01.742668 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-17 07:29:11.221431 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortTiming.R: v Summary finished, at 2026-03-17 07:29:12.07181 Saving _problems/test-summariseCohortTiming-63.R > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [501s/329s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-18 04:54:51.309599 > test-plotCohortTiming.R: v Summary finished, at 2026-03-18 04:54:51.595589 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-18 04:55:00.6447 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-18 04:55:00.79085 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-18 04:57:25.686421 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-18 04:57:26.244776 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-18 04:57:37.794146 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-18 04:57:38.879968 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f7c35c6f1b4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f7c35c6f1e1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f7c35c721b1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x199) [0x7f7c35f77e99] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x90724a) [0x7f7c3510724a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f7c3682c228] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x7d) [0x7f7c3682de8d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f7c3682e42f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7e) [0x7f7c35f65aae] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2d2) [0x7f7c35f65d02] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f7c35f6643a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f7c35f6662a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x685) [0x7f7c36631dc5] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4da) [0x7f7c3663256a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e32b97) [0x7f7c36632b97] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f7c3660e714] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1b5) [0x7f7c36612df5] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f7c36634c05] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f7c36634cb0] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x43f) [0x7f7c3537285f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f7c353ec00a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x10306e) [0x7f7c5230306e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x13ece1) [0x7f7c5233ece1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f7c5234f14a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14fb65) [0x7f7c5234fb65] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x147bed) [0x7f7c52347bed] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14fb65) [0x7f7c5234fb65] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x147bed) [0x7f7c52347bed] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d0a0) [0x7f7c408570a0] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x10141a) [0x7f7c5230141a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15419d) [0x7f7c5235419d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152be4) [0x7f7c52352be4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1437fc) [0x7f7c523437fc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f7c52352189] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/library/methods/libs/methods.so(+0x5b7d) [0x7f7c40919b7d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19e7e4) [0x7f7c5239e7e4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x148a4f) [0x7f7c52348a4f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c867) [0x7f7c5239c867] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c867) [0x7f7c5239c867] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c9e1) [0x7f7c5239c9e1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15419d) [0x7f7c5235419d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152be4) [0x7f7c52352be4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1555ef) [0x7f7c523555ef] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x155ab4) [0x7f7c52355ab4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f7c35c6f1b4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f7c35c6f1e1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f7c35c721b1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x199) [0x7f7c35f77e99] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x90724a) [0x7f7c3510724a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f7c3682c228] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x7d) [0x7f7c3682de8d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f7c3682e42f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7e) [0x7f7c35f65aae] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2d2) [0x7f7c35f65d02] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f7c3683ea2d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x73) [0x7f7c35f65aa3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f7c35f6643a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f7c35f6662a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x685) [0x7f7c36631dc5] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4da) [0x7f7c3663256a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e32b97) [0x7f7c36632b97] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f7c3660e714] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1b5) [0x7f7c36612df5] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f7c36634c05] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f7c36634cb0] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x43f) [0x7f7c3537285f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f7c353ec00a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x10306e) [0x7f7c5230306e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x13ece1) [0x7f7c5233ece1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f7c5234f14a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14fb65) [0x7f7c5234fb65] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x147bed) [0x7f7c52347bed] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14f857) [0x7f7c5234f857] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14fb65) [0x7f7c5234fb65] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x147bed) [0x7f7c52347bed] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d0a0) [0x7f7c408570a0] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x10141a) [0x7f7c5230141a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15419d) [0x7f7c5235419d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152be4) [0x7f7c52352be4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1437fc) [0x7f7c523437fc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f7c52352189] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/library/methods/libs/methods.so(+0x5b7d) [0x7f7c40919b7d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19e7e4) [0x7f7c5239e7e4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x148a4f) [0x7f7c52348a4f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c867) [0x7f7c5239c867] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c867) [0x7f7c5239c867] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152869) [0x7f7c52352869] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c2f3) [0x7f7c5239c2f3] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19c9e1) [0x7f7c5239c9e1] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x19cc1b) [0x7f7c5239cc1b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1434dc) [0x7f7c523434dc] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15419d) [0x7f7c5235419d] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x152be4) [0x7f7c52352be4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x52f) [0x7f7c5234f31f] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x1555ef) [0x7f7c523555ef] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x15108e) [0x7f7c5235108e] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x151e39) [0x7f7c52351e39] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f7c5234f07a] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x155ab4) [0x7f7c52355ab4] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x143705) [0x7f7c52343705] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(+0x14eb8b) [0x7f7c5234eb8b] /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f7c5234ef3b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.1.1
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: doc 3.6Mb help 1.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd': mockCohortCharacteristics Code: function(con = NULL, writeSchema = NULL, numberIndividuals = 10, ..., seed = NULL) Docs: function(numberIndividuals = 10, ..., source = "local", con = lifecycle::deprecated(), writeSchema = lifecycle::deprecated(), seed = lifecycle::deprecated()) Argument names in docs not in code: source Mismatches in argument names (first 3): Position: 1 Code: con Docs: numberIndividuals Position: 2 Code: writeSchema Docs: ... Position: 3 Code: numberIndividuals Docs: source Mismatches in argument default values: Name: 'con' Code: NULL Docs: lifecycle::deprecated() Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated() Name: 'seed' Code: NULL Docs: lifecycle::deprecated() Flavor: r-oldrel-macos-x86_64

Version: 1.1.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [393s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-19 01:59:11.523231 > test-plotCohortTiming.R: v Summary finished, at 2026-03-19 01:59:11.813405 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-19 01:59:24.87757 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-19 01:59:25.068085 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 02:02:18.776398 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 02:02:19.429558 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-19 02:02:32.431835 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: v Summary finished, at 2026-03-19 02:02:33.664813 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64