Last updated on 2025-11-06 00:50:35 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 7.24 | 75.26 | 82.50 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 5.62 | 52.94 | 58.56 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 56.00 | 82.83 | 138.83 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 47.00 | 98.14 | 145.14 | ERROR | |
| r-devel-windows-x86_64 | 0.1.0 | 10.00 | 84.00 | 94.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.0 | 7.64 | 70.54 | 78.18 | NOTE | |
| r-release-linux-x86_64 | 0.1.0 | 7.43 | 70.10 | 77.53 | NOTE | |
| r-release-macos-arm64 | 0.1.0 | 4.00 | 46.00 | 50.00 | NOTE | |
| r-release-macos-x86_64 | 0.1.0 | 7.00 | 84.00 | 91.00 | NOTE | |
| r-release-windows-x86_64 | 0.1.0 | 10.00 | 80.00 | 90.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.0 | 4.00 | 43.00 | 47.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | 6.00 | 72.00 | 78.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 12.00 | 106.00 | 118.00 | OK |
Version: 0.1.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘CreateCohortExplorerApp.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testOracle.R’ [5s/13s]
Running ‘testPostgres.R’ [4s/68s]
Running ‘testRedshift.R’
Running ‘testSqlServer.R’ [5s/10s]
Running the tests in ‘tests/testPostgres.R’ failed.
Complete output:
> library(testthat)
> options(dbms = "postgresql")
> test_check("CohortExplorer")
Loading required package: CohortExplorer
Loading required package: DatabaseConnector
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
************* Testing on postgresql *************
Consider adding `DATABASECONNECTOR_JAR_FOLDER='/tmp/Rtmp3UAC5Y/working_dir/RtmpsDVTfB/jdbcDrivers1af985361849e4'` to /data/gannet/ripley/.Renviron and restarting R.
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Error in `FUN()`:
! In path: "/data/gannet/ripley/R/packages/tests-devel/CohortExplorer.Rcheck/tests/testthat/setup.R"
Caused by error in `download.file()`:
! cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. ├─testthat::test_check("CohortExplorer")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─DatabaseConnector::downloadJdbcDrivers(dbms, pathToDriver = jdbcDriverFolder) at tests/testthat/setup.R:13:3
15. │ └─utils::download.file(...)
16. └─base::.handleSimpleError(...)
17. └─testthat (local) h(simpleError(msg, call))
18. └─rlang::abort(...)
Warning message:
In download.file(url = paste0(driverSource$baseUrl, driverSource$fileName), :
URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar': Timeout of 60 seconds was reached
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc