Last updated on 2024-08-16 12:49:13 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.1.0 | 20.15 | 250.49 | 270.64 | NOTE | |
r-devel-linux-x86_64-debian-gcc | 1.1.0 | 14.09 | 175.12 | 189.21 | NOTE | |
r-devel-linux-x86_64-fedora-clang | 1.1.0 | 459.41 | NOTE | |||
r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 431.31 | NOTE | |||
r-devel-windows-x86_64 | 1.1.0 | 25.00 | 416.00 | 441.00 | NOTE | |
r-patched-linux-x86_64 | 1.1.0 | 20.33 | 228.74 | 249.07 | NOTE | |
r-release-linux-x86_64 | 1.1.0 | 18.63 | 237.36 | 255.99 | NOTE | |
r-release-macos-arm64 | 1.1.0 | 5.00 | ERROR | |||
r-release-macos-x86_64 | 1.1.0 | 310.00 | ERROR | |||
r-release-windows-x86_64 | 1.1.0 | 26.00 | 411.00 | 437.00 | NOTE | |
r-oldrel-macos-arm64 | 1.1.0 | 130.00 | ERROR | |||
r-oldrel-macos-x86_64 | 1.1.0 | 251.00 | ERROR | |||
r-oldrel-windows-x86_64 | 1.1.0 | 31.00 | 563.00 | 594.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ArchR’
Imports includes 31 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene'
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggbio’
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19'
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene',
'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘COVID-walkthrough.Rmd’
...
> knitr::opts_chunk$set(collapse = TRUE, comment = "#>",
+ eval = FALSE)
> library(MOCHA)
> library(ArchR)
When sourcing ‘COVID-walkthrough.R’:
Error: there is no package called ‘ArchR’
Execution halted
when running code in ‘ImportingFromOtherSources.Rmd’
...
The following objects are masked from ‘package:base’:
intersect, t
> library(SeuratDisk)
When sourcing ‘ImportingFromOtherSources.R’:
Error: there is no package called ‘SeuratDisk’
Execution halted
‘COVID-walkthrough.Rmd’ using ‘UTF-8’... failed
‘ImportingFromOtherSources.Rmd’ using ‘UTF-8’... failed
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [72s/109s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ──
Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg19")
Backtrace:
▆
1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3
2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome)
3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked)
4. └─BSgenome:::.stopOnAvailablePkg(genome)
[ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64