Last updated on 2026-08-01 01:52:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 4.10 | 74.56 | 78.66 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 2.75 | 51.27 | 54.02 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 126.52 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 53.40 | NOTE | |||
| r-devel-windows-x86_64 | 1.4 | 6.00 | 88.00 | 94.00 | NOTE | |
| r-patched-linux-x86_64 | 1.4 | 4.53 | 69.80 | 74.33 | NOTE | |
| r-release-linux-x86_64 | 1.4 | 2.58 | 69.82 | 72.40 | NOTE | |
| r-release-macos-arm64 | 1.4 | 1.00 | 27.00 | 28.00 | NOTE | |
| r-release-macos-x86_64 | 1.4 | 3.00 | 92.00 | 95.00 | NOTE | |
| r-release-windows-x86_64 | 1.4 | 6.00 | 97.00 | 103.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.4 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.4 | 3.00 | 76.00 | 79.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.4 | 8.00 | 108.00 | 116.00 | NOTE |
Version: 1.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Rampal", "S."),
family = "Etienne",
role = c("aut", "cre"),
email = "r.s.etienne@rug.nl")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: Rd files
Result: NOTE
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
31 | \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
32 | \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
33 | \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
34 | \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
35 | \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
36 | \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
37 | \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.4
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0Q9Zfe’ ‘~/tmp/scratch/Rtmp0iw6Ww’
‘~/tmp/scratch/Rtmp1UAqiI’ ‘~/tmp/scratch/Rtmp1k4y2d’
‘~/tmp/scratch/Rtmp1qyFvM’ ‘~/tmp/scratch/Rtmp2B8MmL’
‘~/tmp/scratch/Rtmp2OGW5s’ ‘~/tmp/scratch/Rtmp3Gu5gk’
‘~/tmp/scratch/Rtmp3T5nO4’ ‘~/tmp/scratch/Rtmp3Vbcm5’
‘~/tmp/scratch/Rtmp3tepDM’ ‘~/tmp/scratch/Rtmp3vr5Jp’
‘~/tmp/scratch/Rtmp4j4l6i’ ‘~/tmp/scratch/Rtmp4tEe4Q’
‘~/tmp/scratch/Rtmp5SPGNb’ ‘~/tmp/scratch/Rtmp6dTGml’
‘~/tmp/scratch/Rtmp6k12Si’ ‘~/tmp/scratch/Rtmp7u2kdj’
‘~/tmp/scratch/Rtmp8B5rFt’ ‘~/tmp/scratch/Rtmp8Flkcu’
‘~/tmp/scratch/Rtmp8Zz3e3’ ‘~/tmp/scratch/Rtmp9EZFMU’
‘~/tmp/scratch/RtmpAS1ZwO’ ‘~/tmp/scratch/RtmpAuxxZS’
‘~/tmp/scratch/RtmpAwYxCT’ ‘~/tmp/scratch/RtmpCx1Mbu’
‘~/tmp/scratch/RtmpD3Hnd0’ ‘~/tmp/scratch/RtmpDBA4K5’
‘~/tmp/scratch/RtmpDb0bZM’ ‘~/tmp/scratch/RtmpDhe94y’
‘~/tmp/scratch/RtmpDll54J’ ‘~/tmp/scratch/RtmpDu66Nh’
‘~/tmp/scratch/RtmpEb5Ngd’ ‘~/tmp/scratch/RtmpF6VfOt’
‘~/tmp/scratch/RtmpFklY75’ ‘~/tmp/scratch/RtmpGbmz9f’
‘~/tmp/scratch/RtmpGkG4wy’ ‘~/tmp/scratch/RtmpGpOlcN’
‘~/tmp/scratch/RtmpI2tMPC’ ‘~/tmp/scratch/RtmpIi70z6’
‘~/tmp/scratch/RtmpIlGRmZ’ ‘~/tmp/scratch/RtmpKFMkwU’
‘~/tmp/scratch/RtmpLNokts’ ‘~/tmp/scratch/RtmpMC7jZG’
‘~/tmp/scratch/RtmpMtJeh4’ ‘~/tmp/scratch/RtmpNGtkDL’
‘~/tmp/scratch/RtmpOeiTNT’ ‘~/tmp/scratch/RtmpPzE3R8’
‘~/tmp/scratch/RtmpQRoCDI’ ‘~/tmp/scratch/RtmpRC5BLO’
‘~/tmp/scratch/RtmpRLjMH4’ ‘~/tmp/scratch/RtmpRMvV2y’
‘~/tmp/scratch/RtmpU1Pcg3’ ‘~/tmp/scratch/RtmpUfX2P2’
‘~/tmp/scratch/RtmpVsNnab’ ‘~/tmp/scratch/RtmpWHIDau’
‘~/tmp/scratch/RtmpXVnrDq’ ‘~/tmp/scratch/RtmpXWpMH1’
‘~/tmp/scratch/RtmpY0NIFF’ ‘~/tmp/scratch/RtmpYOlhuM’
‘~/tmp/scratch/RtmpYhMPcZ’ ‘~/tmp/scratch/RtmpZ1g85l’
‘~/tmp/scratch/RtmpZCCpra’ ‘~/tmp/scratch/RtmpZj00pS’
‘~/tmp/scratch/RtmpZvJ5ON’ ‘~/tmp/scratch/RtmpaPjVXT’
‘~/tmp/scratch/RtmpbFEVkK’ ‘~/tmp/scratch/Rtmpc5leCj’
‘~/tmp/scratch/RtmpciOjod’ ‘~/tmp/scratch/RtmpdBZoaR’
‘~/tmp/scratch/RtmpdZGRgb’ ‘~/tmp/scratch/RtmpdnsU20’
‘~/tmp/scratch/Rtmpdq6bPr’ ‘~/tmp/scratch/RtmpduaDcc’
‘~/tmp/scratch/RtmpdyqmEl’ ‘~/tmp/scratch/RtmpedH09V’
‘~/tmp/scratch/RtmpedUruG’ ‘~/tmp/scratch/RtmpezZEdg’
‘~/tmp/scratch/RtmpfXeBrV’ ‘~/tmp/scratch/RtmpflKeas’
‘~/tmp/scratch/RtmpfzxHYF’ ‘~/tmp/scratch/Rtmpghs0gw’
‘~/tmp/scratch/RtmphCeFhD’ ‘~/tmp/scratch/Rtmpigs5jE’
‘~/tmp/scratch/Rtmpiya7Fx’ ‘~/tmp/scratch/Rtmpj88CEZ’
‘~/tmp/scratch/Rtmpl10Vxf’ ‘~/tmp/scratch/RtmplBSc6q’
‘~/tmp/scratch/RtmplJlSEG’ ‘~/tmp/scratch/RtmplUQaX2’
‘~/tmp/scratch/RtmplZWxWr’ ‘~/tmp/scratch/Rtmplu7ruP’
‘~/tmp/scratch/RtmpmVA5hi’ ‘~/tmp/scratch/RtmpnUGJVg’
‘~/tmp/scratch/RtmpniHLbD’ ‘~/tmp/scratch/RtmpnmfSou’
‘~/tmp/scratch/RtmpoDXFvV’ ‘~/tmp/scratch/RtmpoGjyPH’
‘~/tmp/scratch/Rtmpok2eA2’ ‘~/tmp/scratch/RtmpqmpiCL’
‘~/tmp/scratch/RtmpqqomWY’ ‘~/tmp/scratch/Rtmpr4c8Dq’
‘~/tmp/scratch/RtmprpH1T0’ ‘~/tmp/scratch/Rtmps7is4F’
‘~/tmp/scratch/RtmptEjjAF’ ‘~/tmp/scratch/RtmptyfmaC’
‘~/tmp/scratch/RtmpuSJcLl’ ‘~/tmp/scratch/RtmpvIXkhy’
‘~/tmp/scratch/RtmpvItwdl’ ‘~/tmp/scratch/RtmpvJVPcH’
‘~/tmp/scratch/RtmpvQQzgh’ ‘~/tmp/scratch/RtmpvZtqK0’
‘~/tmp/scratch/RtmpwiaHao’ ‘~/tmp/scratch/RtmpxmxHGZ’
‘~/tmp/scratch/Rtmpy6Y2xs’ ‘~/tmp/scratch/RtmpyMETWh’
‘~/tmp/scratch/RtmpyQvjOV’ ‘~/tmp/scratch/RtmpySfNSj’
‘~/tmp/scratch/RtmpzeVsbt’ ‘~/tmp/scratch/Rtmpzut1kd’
‘~/tmp/scratch/RtmpzxMKLl’ ‘~/tmp/scratch/ccCS4D6a.s’
‘~/tmp/scratch/ccG26Yoc.s’ ‘~/tmp/scratch/ccNkm0In.s’
‘~/tmp/scratch/ccgBy5MY.s’ ‘~/tmp/scratch/xvfb-run.0OJYkt’
‘~/tmp/scratch/xvfb-run.1XTyZv’ ‘~/tmp/scratch/xvfb-run.2875ga’
‘~/tmp/scratch/xvfb-run.4eSRxO’ ‘~/tmp/scratch/xvfb-run.6KyGrr’
‘~/tmp/scratch/xvfb-run.8evVbS’ ‘~/tmp/scratch/xvfb-run.8kgPTw’
‘~/tmp/scratch/xvfb-run.8qVXq7’ ‘~/tmp/scratch/xvfb-run.Dbj0V4’
‘~/tmp/scratch/xvfb-run.ENPRTo’ ‘~/tmp/scratch/xvfb-run.G4uJM6’
‘~/tmp/scratch/xvfb-run.Gne1WL’ ‘~/tmp/scratch/xvfb-run.J5TXkw’
‘~/tmp/scratch/xvfb-run.JxMiM4’ ‘~/tmp/scratch/xvfb-run.K88xYE’
‘~/tmp/scratch/xvfb-run.LdfLFJ’ ‘~/tmp/scratch/xvfb-run.MptDkv’
‘~/tmp/scratch/xvfb-run.MuM6Z2’ ‘~/tmp/scratch/xvfb-run.VZ3wBD’
‘~/tmp/scratch/xvfb-run.WfBwyQ’ ‘~/tmp/scratch/xvfb-run.Xxu8ch’
‘~/tmp/scratch/xvfb-run.YXqY2H’ ‘~/tmp/scratch/xvfb-run.cM1OAB’
‘~/tmp/scratch/xvfb-run.cMlhhU’ ‘~/tmp/scratch/xvfb-run.d9iREn’
‘~/tmp/scratch/xvfb-run.gfMw5t’ ‘~/tmp/scratch/xvfb-run.hfS0Lz’
‘~/tmp/scratch/xvfb-run.jPI5Ne’ ‘~/tmp/scratch/xvfb-run.lnpBzU’
‘~/tmp/scratch/xvfb-run.o5pdOY’ ‘~/tmp/scratch/xvfb-run.p8zNKQ’
‘~/tmp/scratch/xvfb-run.sJ2CFa’ ‘~/tmp/scratch/xvfb-run.sld1Fc’
‘~/tmp/scratch/xvfb-run.syIgv3’ ‘~/tmp/scratch/xvfb-run.tVEYXZ’
‘~/tmp/scratch/xvfb-run.zOTTHX’
‘/dev/shm/0c3681ce-fa97-4f91-b53c-f126aea78b7a’
‘/dev/shm/0c3681ce-fa97-4f91-b53c-f126aea78b7a_counter’
‘/dev/shm/1cc7c18f-6a86-44fa-ad2a-9a5ed63c7dd8’
‘/dev/shm/1cc7c18f-6a86-44fa-ad2a-9a5ed63c7dd8_counter’
‘/dev/shm/1d02fc22-0227-43bd-989e-3382c44730e9’
‘/dev/shm/1d02fc22-0227-43bd-989e-3382c44730e9_counter’
‘/dev/shm/207ca06f-f45c-4257-a39f-faeefb757057’
‘/dev/shm/207ca06f-f45c-4257-a39f-faeefb757057_counter’
‘/dev/shm/26c30136-de67-474a-9c33-108bbd336a39’
‘/dev/shm/26c30136-de67-474a-9c33-108bbd336a39_counter’
‘/dev/shm/308128c3-49f6-41fa-9ac8-ebff606b8dd7’
‘/dev/shm/308128c3-49f6-41fa-9ac8-ebff606b8dd7_counter’
‘/dev/shm/30f1fe0e-be9c-43f0-b3e5-2d40b3d52893’
‘/dev/shm/30f1fe0e-be9c-43f0-b3e5-2d40b3d52893_counter’
‘/dev/shm/3bbb2590-5152-4871-a636-22b06e9714cc’
‘/dev/shm/3bbb2590-5152-4871-a636-22b06e9714cc_counter’
‘/dev/shm/6e4e7c35-59ea-4976-9112-d5fe482d61c8’
‘/dev/shm/6e4e7c35-59ea-4976-9112-d5fe482d61c8_counter’
‘/dev/shm/74f10bbc-d707-4a91-810b-d787e0a71c3f’
‘/dev/shm/74f10bbc-d707-4a91-810b-d787e0a71c3f_counter’
‘/dev/shm/78fb881e-db47-4b2b-9574-61caf58f1266’
‘/dev/shm/78fb881e-db47-4b2b-9574-61caf58f1266_counter’
‘/dev/shm/99e099d9-e3dd-4423-87c6-1da8f349dbf2’
‘/dev/shm/99e099d9-e3dd-4423-87c6-1da8f349dbf2_counter’
‘/dev/shm/a9f98bf1-dff7-41ed-b3f3-4e435e66e8bd’
‘/dev/shm/a9f98bf1-dff7-41ed-b3f3-4e435e66e8bd_counter’
‘/dev/shm/ae082f7a-1b55-4c92-9474-825563780513’
‘/dev/shm/ae082f7a-1b55-4c92-9474-825563780513_counter’
‘/dev/shm/af074ceb-d313-4562-bdbe-f34fe439339b’
‘/dev/shm/af074ceb-d313-4562-bdbe-f34fe439339b_counter’
‘/dev/shm/b37e6370-6cab-43f4-99bc-985e2e301e06’
‘/dev/shm/b37e6370-6cab-43f4-99bc-985e2e301e06_counter’
‘/dev/shm/b4f9ad56-1d77-42e2-9320-c058a6f090cc’
‘/dev/shm/b4f9ad56-1d77-42e2-9320-c058a6f090cc_counter’
‘/dev/shm/b8a441af-c248-4afa-aa10-43b6c12b5a22’
‘/dev/shm/b8a441af-c248-4afa-aa10-43b6c12b5a22_counter’
‘/dev/shm/bba65da9-93cc-4bce-868f-ab93bfde7cc1’
‘/dev/shm/bba65da9-93cc-4bce-868f-ab93bfde7cc1_counter’
‘/dev/shm/d762f6a5-c3cb-47ed-b316-c2f3834617b5’
‘/dev/shm/d762f6a5-c3cb-47ed-b316-c2f3834617b5_counter’
‘/dev/shm/e8c6eac8-8366-4e0f-bf46-7dfd855ae7fc’
‘/dev/shm/sem.0c3681ce-fa97-4f91-b53c-f126aea78b7a_bigmemory_counter_mutex’
‘/dev/shm/sem.1cc7c18f-6a86-44fa-ad2a-9a5ed63c7dd8_bigmemory_counter_mutex’
‘/dev/shm/sem.207ca06f-f45c-4257-a39f-faeefb757057_bigmemory_counter_mutex’
‘/dev/shm/sem.26c30136-de67-474a-9c33-108bbd336a39_bigmemory_counter_mutex’
‘/dev/shm/sem.308128c3-49f6-41fa-9ac8-ebff606b8dd7_bigmemory_counter_mutex’
‘/dev/shm/sem.30f1fe0e-be9c-43f0-b3e5-2d40b3d52893_bigmemory_counter_mutex’
‘/dev/shm/sem.3bbb2590-5152-4871-a636-22b06e9714cc_bigmemory_counter_mutex’
‘/dev/shm/sem.6e4e7c35-59ea-4976-9112-d5fe482d61c8_bigmemory_counter_mutex’
‘/dev/shm/sem.74f10bbc-d707-4a91-810b-d787e0a71c3f_bigmemory_counter_mutex’
‘/dev/shm/sem.78fb881e-db47-4b2b-9574-61caf58f1266_bigmemory_counter_mutex’
‘/dev/shm/sem.99e099d9-e3dd-4423-87c6-1da8f349dbf2_bigmemory_counter_mutex’
‘/dev/shm/sem.a9f98bf1-dff7-41ed-b3f3-4e435e66e8bd_bigmemory_counter_mutex’
‘/dev/shm/sem.ae082f7a-1b55-4c92-9474-825563780513_bigmemory_counter_mutex’
‘/dev/shm/sem.af074ceb-d313-4562-bdbe-f34fe439339b_bigmemory_counter_mutex’
‘/dev/shm/sem.b37e6370-6cab-43f4-99bc-985e2e301e06_bigmemory_counter_mutex’
‘/dev/shm/sem.b4f9ad56-1d77-42e2-9320-c058a6f090cc_bigmemory_counter_mutex’
‘/dev/shm/sem.b8a441af-c248-4afa-aa10-43b6c12b5a22_bigmemory_counter_mutex’
‘/dev/shm/sem.d762f6a5-c3cb-47ed-b316-c2f3834617b5_bigmemory_counter_mutex’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘ade4’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc