Last updated on 2025-09-13 13:50:09 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| pastclim | 13 | ||
| tidypopgen | 4 | 2 | 7 |
| tidysdm | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, NOTE: 2, OK: 7
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [213s/230s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [189s/188s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [202s/199s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
which: no admixture in (/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin)
which: no admixture in (/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin)
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {LEA} is not installed (1): 'test_gt_snmf.R:1:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 3 | SKIP 5 | PASS 967 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'admixtools', 'LEA'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: installed package size
Result: NOTE
installed size is 8.8Mb
sub-directories of 1Mb or more:
doc 1.2Mb
libs 5.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'admixtools'
Flavor: r-oldrel-windows-x86_64
Version: 0.3.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [202s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: tibble
>
> test_check("tidypopgen")
Adding missing grouping variables: `population`
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R-4.4.3/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/AdoptOpenJDK/jdk-11.0.11.9-hotspot/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/sourceforge/ipmiutil:/c/Program Files/Python39:/c/Program Files/Python39/Scripts:/d/Compiler/Ruby/bin:/c/Program Files (x86)/WinSCP:/c/Program Files/gs/gs/bin:/c/Program Files/Supermicro/SuperDoctor5:/c/Program Files/Intel/Intel(R) Memory and Storage Tool:/c/Program Files/PuTTY:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/c/Users/CRAN/AppData/Roaming/TinyTeX/bin/win32:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R-4.4.3/bin/x64/)
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) && (2):
'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:348:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_qc_report_indiv.R:86:3'): autoplot list ──────────────────────
as.vector(class(plot1)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 1 | WARN 4 | SKIP 4 | PASS 978 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13