CRAN Package Check Results for Maintainer Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>

CRAN Package Check Results for Maintainer ‘Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>’

Last updated on 2025-09-13 00:51:11 CEST.

Package	ERROR	NOTE	OK
ade4		5	8
ade4TkGUI			13
adegraphics		2	11
adephylo			13
adespatial			13
aods3			13
CINID			13
DRomics		3	10
fitdistrplus	1		12
Interatrix			13
LDcorSV			13
LifemapR			13
MareyMap			13
Mondrian			13
nlsMicrobio			13
nlstools			13
OnAge			13
phylter			13
ssd4mosaic	2		11

Package ade4

Current CRAN status: NOTE: 5, OK: 8

Version: 1.7-23
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘sp’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.7-23
Check: installed package size
Result: NOTE installed size is 9.3Mb sub-directories of 1Mb or more: R 2.0Mb data 2.9Mb libs 2.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ade4TkGUI

Current CRAN status: OK: 13

Package adegraphics

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0-22
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: R 2.1Mb doc 2.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package adephylo

Current CRAN status: OK: 13

Package adespatial

Current CRAN status: OK: 13

Package aods3

Current CRAN status: OK: 13

Package CINID

Current CRAN status: OK: 13

Package DRomics

Current CRAN status: NOTE: 3, OK: 10

Version: 2.6-2
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 2.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package fitdistrplus

Current CRAN status: ERROR: 1, OK: 12

Version: 1.2-4
Check: tests
Result: ERROR Running 't-CIcdfplot.R' [15s] Running 't-Surv2fitdistcens.R' [2s] Running 't-bootdist.R' [10s] Running 't-bootdistcens.R' [2s] Running 't-cdfcomp.R' [4s] Running 't-cdfcompcens.R' [4s] Running 't-cvg-algo.R' [0s] Running 't-denscomp.R' [4s] Running 't-descdist.R' [2s] Running 't-detectbound.R' [2s] Running 't-fitbench.R' [0s] Running 't-fitdist-burr.R' [35s] Running 't-fitdist-customoptim.R' [2s] Running 't-fitdist-hessianpb.R' [2s] Running 't-fitdist-test-arguments.R' [2s] Running 't-fitdist.R' [3s] Running 't-fitdistcens.R' [4s] Running 't-gen-max-spacing-estim.R' [2s] Running 't-getparam.R' [2s] Running 't-gofstat.R' [2s] Running 't-init-actuar.R' [0s] Running 't-llplot.R' [4s] Running 't-lnL-surf.R' [2s] Running 't-logLik-vcov-coef.R' [2s] Running 't-manageparam.R' [2s] Running 't-mgedist.R' [3s] Running 't-mledist-asymptotic-vcov.R' [2s] Running 't-mledist-cens.R' [2s] Running 't-mledist-cvg-NelderMead.R' [0s] Running 't-mledist-nocens.R' [3s] Running 't-mledist-paramsupport.R' [5s] Running 't-mmedist-asymptotic-vcov.R' [3s] Running 't-mmedist.R' [4s] Running 't-msedist.R' [3s] Running 't-parallel.R' [0s] Running 't-plotdist.R' [2s] Running 't-plotdistcens.R' [2s] Running 't-ppcomp.R' [4s] Running 't-ppcompcens.R' [3s] Running 't-prefit.R' [2s] Running 't-qme-discrete.R' [8s] Running 't-qmedist-cvg-NelderMead.R' [0s] Running 't-qmedist.R' [5s] Running 't-qqcomp.R' [4s] Running 't-qqcompcens.R' [4s] Running 't-quantiledist.R' [2s] Running 't-startfixarg-overall.R' [4s] Running 't-starting-value-scale-rate.R' [2s] Running 't-startingvalues-fellerpareto-family.R' [4s] Running 't-startingvalues-inv-family.R' [17s] Running 't-startingvalues-invBurr-family.R' [6s] Running 't-startingvalues-invtrgamma-family.R' [2s] Running 't-startingvalues-othercont-family.R' [6s] Running 't-startingvalues-trgamma-family.R' [2s] Running 't-startingvalues-zeromod-family.R' [2s] Running 't-startingvalues-zerotrunc-family.R' [2s] Running 't-startingvalues.R' [2s] Running 't-util-mmedist-vcov.R' [2s] Running 't-util-npmle.R' [2s] Running 't-util-npsurv-mainfunction.R' [2s] Running 't-util-testdensity.R' [2s] Running 't-weird-ppcomp-cens.R' [2s] Running 't-weird-qqcomp-cens.R' [2s] Running the tests in 'tests/t-startingvalues-inv-family.R' failed. Complete output: > > require(actuar) Loading required package: actuar Attaching package: 'actuar' The following objects are masked from 'package:stats': sd, var The following object is masked from 'package:grDevices': cm > require(fitdistrplus) Loading required package: fitdistrplus Loading required package: MASS Loading required package: survival > n <- 1e4 > > > #### Inverse exponential #### > > x <- rinvexp(n, 3) > > if(FALSE) + { + fitdistrplus:::startarg_invtransgamma_family(x, "invexp") + fitdistrplus:::startarg_transgamma_family(1/x, "exp") + } > > cdfcomp(fitdist(x, "invexp"), xlogscale = TRUE, do.points = FALSE) > > > #### Inverse transformed gamma #### > > x <- rinvtrgamma(n, 3, 3, 10) > > if(FALSE) + { + fitdistrplus:::startarg_invtransgamma_family(x, "invtrgamma") + fitdistrplus:::startarg_transgamma_family(1/x, "trgamma") + + cutshapeparam(list("shape0"=1e3, "shape33"=1e-10, "theta"=22)) + cutshapeparam(list("shape0"=1e3, "shape33"=1e3, "theta"=22)) + + cutshapeparam(fitdistrplus:::startarg_invtransgamma_family(x, "invtrgamma")) + } > > cdfcomp(fitdist(x, "invtrgamma", lower=0), xlogscale = TRUE, do.points = FALSE) Warning messages: 1: In cov2cor(varcovar) : diag(V) had non-positive or NA entries; the non-finite result may be dubious 2: In sqrt(diag(varcovar)) : NaNs produced > cdfcomp(fitdist(x, "invtrgamma", lower=0, start=list("shape1"=100, "shape2"=1, "scale"=1/2)), + xlogscale = TRUE, do.points = FALSE) Error in fitdist(x, "invtrgamma", lower = 0, start = list(shape1 = 100, : the function mle failed to estimate the parameters, with the error code 1 Calls: cdfcomp -> fitdist Execution halted Flavor: r-release-windows-x86_64

Package Interatrix

Current CRAN status: OK: 13

Package LDcorSV

Current CRAN status: OK: 13

Package LifemapR

Current CRAN status: OK: 13

Package MareyMap

Current CRAN status: OK: 13

Package Mondrian

Current CRAN status: OK: 13

Package nlsMicrobio

Current CRAN status: OK: 13

Package nlstools

Current CRAN status: OK: 13

Package OnAge

Current CRAN status: OK: 13

Package phylter

Current CRAN status: OK: 13

Package ssd4mosaic

Current CRAN status: ERROR: 2, OK: 11

Version: 1.0.3
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [112s/141s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ssd4mosaic) > > test_check("ssd4mosaic") [ FAIL 3 | WARN 0 | SKIP 1 | PASS 66 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fct_ci_plots.R:23:3'): Confidence intervals are added to plots ── plot_ci$layers has length 16, not length 11. ── Failure ('test-fct_ci_plots.R:24:3'): Confidence intervals are added to plots ── plot_cens_ci$layers has length 11, not length 7. ── Error ('test-fct_options_plots.R:8:3'): Uncensored data can be coloured by group ── Error in `order(p$layers[[1]]$data$group)`: argument 1 is not a vector Backtrace: ▆ 1. └─base::order(p$layers[[1]]$data$group) at test-fct_options_plots.R:8:3 [ FAIL 3 | WARN 0 | SKIP 1 | PASS 66 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.3
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [146s/168s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ssd4mosaic) > > test_check("ssd4mosaic") [ FAIL 3 | WARN 0 | SKIP 1 | PASS 66 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fct_ci_plots.R:23:3'): Confidence intervals are added to plots ── plot_ci$layers has length 16, not length 11. ── Failure ('test-fct_ci_plots.R:24:3'): Confidence intervals are added to plots ── plot_cens_ci$layers has length 11, not length 7. ── Error ('test-fct_options_plots.R:8:3'): Uncensored data can be coloured by group ── Error in `order(p$layers[[1]]$data$group)`: argument 1 is not a vector Backtrace: ▆ 1. └─base::order(p$layers[[1]]$data$group) at test-fct_options_plots.R:8:3 [ FAIL 3 | WARN 0 | SKIP 1 | PASS 66 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang