Last updated on 2025-10-31 13:51:14 CET.
| Package | ERROR | OK |
|---|---|---|
| Momocs | 9 | 4 |
Current CRAN status: ERROR: 9, OK: 4
Version: 1.4.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
LDA.Rd: lda
img_plot.Rd: readJPEG
ldk_contour.Rd: kde2d
links_delaunay.Rd: delaunayn
plot.LDA.Rd: kde2d
plot.PCA.Rd: kde2d
reLDA.Rd: predict.lda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
>
> ### ** Examples
>
> h <- hearts %>%
+ fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+ efourier(6, norm=FALSE) %>% LDA(~aut)
iteration: 1 gain: 30322
iteration: 2 gain: 1.2498
iteration: 3 gain: 0.34194
iteration: 4 gain: 0.0062954
>
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
>
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calibrate_deviations 6.451 0.019 8.129
calibrate_reconstructions 5.890 0.008 7.032
calibrate_harmonicpower 4.484 0.004 5.872
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
>
> ### ** Examples
>
> h <- hearts %>%
+ fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+ efourier(6, norm=FALSE) %>% LDA(~aut)
iteration: 1 gain: 30322
iteration: 2 gain: 1.2498
iteration: 3 gain: 0.34194
iteration: 4 gain: 0.0062954
>
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
>
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
>
> ### ** Examples
>
> h <- hearts %>%
+ fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+ efourier(6, norm=FALSE) %>% LDA(~aut)
iteration: 1 gain: 30322
iteration: 2 gain: 1.2498
iteration: 3 gain: 0.34194
iteration: 4 gain: 0.0062954
>
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
>
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
>
> ### ** Examples
>
> h <- hearts %>%
+ fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+ efourier(6, norm=FALSE) %>% LDA(~aut)
iteration: 1 gain: 30322
iteration: 2 gain: 1.2498
iteration: 3 gain: 0.34194
iteration: 4 gain: 0.0062954
>
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
>
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calibrate_deviations 5.993 0.024 6.975
calibrate_reconstructions 5.674 0.015 7.846
calibrate_harmonicpower 4.427 0.042 6.143
Flavor: r-patched-linux-x86_64
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘Momocs-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_CV
> ### Title: Plots a cross-validation table as an heatmap
> ### Aliases: plot_CV plot_CV.default plot_CV.LDA
>
> ### ** Examples
>
> h <- hearts %>%
+ fgProcrustes(0.01) %>% coo_slide(ldk=2) %T>% stack %>%
+ efourier(6, norm=FALSE) %>% LDA(~aut)
iteration: 1 gain: 30322
iteration: 2 gain: 1.2498
iteration: 3 gain: 0.34194
iteration: 4 gain: 0.0062954
>
> h %>% plot_CV()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
Warning: The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as
of ggplot2 3.3.4.
ℹ The deprecated feature was likely used in the Momocs package.
Please report the issue at <https://github.com/MomX/Momocs/issues>.
> h %>% plot_CV(freq=FALSE, rm0=FALSE, fill=FALSE)
> # you can customize the returned gg with some ggplot2 functions
> h %>% plot_CV(labels=FALSE, fill=TRUE, axis.size=5) + ggplot2::ggtitle("A confusion matrix")
>
> # or build your own using the prepared data_frame:
> df <- h %>% plot_CV() %$% data
Error in eval(substitute(expr), data, enclos = parent.frame()) :
invalid 'envir' argument of type 'object'
Calls: %$% -> <Anonymous> -> with.default -> eval
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calibrate_deviations 6.187 0.082 8.504
calibrate_reconstructions 5.581 0.003 7.902
calibrate_harmonicpower 4.337 0.067 6.502
Flavor: r-release-linux-x86_64