CRAN Package Check Results for Maintainer Catherine Hurley <catherine.hurley at mu.ie>

CRAN Package Check Results for Maintainer ‘Catherine Hurley <catherine.hurley at mu.ie>’

Last updated on 2025-09-13 00:51:13 CEST.

Package	ERROR	NOTE	OK
bullseye	4		9
condvis2			13
DendSer		13
ERSA		2	11
gclus			13
PairViz		4	9

Package bullseye

Current CRAN status: ERROR: 4, OK: 9

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘bullseye-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: add_nobs_to_pairwise > ### Title: Adds number of observations column to pairwise tibble > ### Aliases: add_nobs_to_pairwise > > ### ** Examples > > irisc <- pairwise_scores(iris[40:150,], by= "Species") > irisc <- add_nobs_to_pairwise(irisc, iris[40:150,], by= "Species") > irisc # A tibble: 24 × 7 x y score group value pair_type n <chr> <chr> <chr> <fct> <dbl> <chr> <int> 1 Petal.Length Sepal.Length pearson setosa 0.584 nn 11 2 Petal.Width Sepal.Length pearson setosa 0.112 nn 11 3 Sepal.Length Sepal.Width pearson setosa 0.756 nn 11 4 Petal.Length Sepal.Width pearson setosa 0.650 nn 11 5 Petal.Width Sepal.Width pearson setosa 0.0694 nn 11 6 Petal.Length Petal.Width pearson setosa 0.421 nn 11 7 Petal.Length Sepal.Length pearson versicolor 0.754 nn 50 8 Petal.Width Sepal.Length pearson versicolor 0.546 nn 50 9 Sepal.Length Sepal.Width pearson versicolor 0.526 nn 50 10 Petal.Length Sepal.Width pearson versicolor 0.561 nn 50 # ℹ 14 more rows > plot_pairwise(irisc) # setosa gets a small slice in proportion to n Error: ! Problem while converting geom to grob. ℹ Error occurred in the 2nd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") Backtrace: ▆ 1. ├─base (local) `<fn>`(x) 2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x) 3. │ ├─ggplot2::ggplot_gtable(data) 4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data) 5. │ └─ggplot2:::by_layer(...) 6. │ ├─rlang::try_fetch(...) 7. │ │ ├─base::tryCatch(...) 8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 13. │ └─l$draw_geom(d, layout) 14. │ └─ggplot2 (local) draw_geom(..., self = self) 15. │ └─self$geom$draw_layer(...) 16. │ └─ggplot2 (local) draw_layer(..., self = self) 17. │ └─base::lapply(...) 18. │ └─ggplot2 (local) FUN(X[[i]], ...) 19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 20. │ └─self$draw_panel(...) 21. └─base::.handleSimpleError(...) 22. └─rlang (local) h(simpleError(msg, call)) 23. └─handlers[[1L]](cnd) 24. └─cli::cli_abort(...) 25. └─rlang::abort(...) Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘calc_pairwise.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘calc_pairwise.Rmd’ --- re-building ‘integrating.Rmd’ using rmarkdown Quitting from integrating.Rmd:79-84 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'integrating.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building ‘integrating.Rmd’ --- re-building ‘vis_pairwise.Rmd’ using rmarkdown Quitting from vis_pairwise.Rmd:51-53 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building ‘vis_pairwise.Rmd’ SUMMARY: processing the following files failed: ‘integrating.Rmd’ ‘vis_pairwise.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘bullseye-Ex.R’ failed The error most likely occurred in: > ### Name: add_nobs_to_pairwise > ### Title: Adds number of observations column to pairwise tibble > ### Aliases: add_nobs_to_pairwise > > ### ** Examples > > irisc <- pairwise_scores(iris[40:150,], by= "Species") > irisc <- add_nobs_to_pairwise(irisc, iris[40:150,], by= "Species") > irisc # A tibble: 24 × 7 x y score group value pair_type n <chr> <chr> <chr> <fct> <dbl> <chr> <int> 1 Petal.Length Sepal.Length pearson setosa 0.584 nn 11 2 Petal.Width Sepal.Length pearson setosa 0.112 nn 11 3 Sepal.Length Sepal.Width pearson setosa 0.756 nn 11 4 Petal.Length Sepal.Width pearson setosa 0.650 nn 11 5 Petal.Width Sepal.Width pearson setosa 0.0694 nn 11 6 Petal.Length Petal.Width pearson setosa 0.421 nn 11 7 Petal.Length Sepal.Length pearson versicolor 0.754 nn 50 8 Petal.Width Sepal.Length pearson versicolor 0.546 nn 50 9 Sepal.Length Sepal.Width pearson versicolor 0.526 nn 50 10 Petal.Length Sepal.Width pearson versicolor 0.561 nn 50 # ℹ 14 more rows > plot_pairwise(irisc) # setosa gets a small slice in proportion to n Error: ! Problem while converting geom to grob. ℹ Error occurred in the 2nd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") Backtrace: ▆ 1. ├─base (local) `<fn>`(x) 2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x) 3. │ ├─ggplot2::ggplot_gtable(data) 4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data) 5. │ └─ggplot2:::by_layer(...) 6. │ ├─rlang::try_fetch(...) 7. │ │ ├─base::tryCatch(...) 8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 13. │ └─l$draw_geom(d, layout) 14. │ └─ggplot2 (local) draw_geom(..., self = self) 15. │ └─self$geom$draw_layer(...) 16. │ └─ggplot2 (local) draw_layer(..., self = self) 17. │ └─base::lapply(...) 18. │ └─ggplot2 (local) FUN(X[[i]], ...) 19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) 20. │ └─self$draw_panel(...) 21. └─base::.handleSimpleError(...) 22. └─rlang (local) h(simpleError(msg, call)) 23. └─handlers[[1L]](cnd) 24. └─cli::cli_abort(...) 25. └─rlang::abort(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘calc_pairwise.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘calc_pairwise.Rmd’ --- re-building ‘integrating.Rmd’ using rmarkdown Quitting from integrating.Rmd:79-84 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'integrating.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building ‘integrating.Rmd’ --- re-building ‘vis_pairwise.Rmd’ using rmarkdown Quitting from vis_pairwise.Rmd:51-53 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vis_pairwise.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 3rd layer. Caused by error in `draw_panel()`: ! unused arguments (lineend = "butt", linejoin = "mitre") --- failed re-building ‘vis_pairwise.Rmd’ SUMMARY: processing the following files failed: ‘integrating.Rmd’ ‘vis_pairwise.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package condvis2

Current CRAN status: OK: 13

Package DendSer

Current CRAN status: NOTE: 13

Version: 1.0.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Catherine Hurley <catherine.hurley@mu.ie>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Catherine", "B."), family = "Hurley", role = "aut"), person(given = "Denise", family = "Earle", role = "aut"), person(given = "Catherine", family = "Hurley", role = "cre", email = "catherine.hurley@mu.ie")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: Rd files
Result: NOTE checkRd: (-1) DendSer.Rd:50: Escaped LaTeX specials: \& Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: for unstated dependencies in ‘demo’
Result: NOTE 'library' or 'require' calls not declared from: ‘HSAUR2’ ‘Iyer517’ ‘PairViz’ ‘RColorBrewer’ ‘mvtnorm’ ‘scagnostics’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package ERSA

Current CRAN status: NOTE: 2, OK: 11

Version: 0.1.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Catherine B. Hurley <catherine.hurley@mu.ie>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Catherine", "B."), family = "Hurley", role = c("aut", "cre"), email = "catherine.hurley@mu.ie") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package gclus

Current CRAN status: OK: 13

Package PairViz

Current CRAN status: NOTE: 4, OK: 9

Version: 1.3.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Catherine Hurley <catherine.hurley@mu.ie>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "C.B.", family = "Hurley", role = "aut"), person(given = "R.W.", family = "Oldford", role = "aut"), person(given = "Catherine", family = "Hurley", role = "cre", email = "catherine.hurley@mu.ie")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.3.6
Check: for unstated dependencies in ‘demo’
Result: NOTE 'library' or 'require' calls not declared from: ‘gclus’ ‘irr’ ‘seriation’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64