Last updated on 2025-10-31 13:51:16 CET.
| Package | ERROR | OK |
|---|---|---|
| cvdprevent | 9 | 4 |
| plotor | 13 |
Current CRAN status: ERROR: 9, OK: 4
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘using_cvdprevent.Rmd’ using rmarkdown
Quitting from using_cvdprevent.Rmd:182-185 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'group_vars' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─gt::gt(return_list$level_2)
2. └─dplyr::group_vars(data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_cvdprevent.Rmd' failed with diagnostics:
no applicable method for 'group_vars' applied to an object of class "NULL"
--- failed re-building ‘using_cvdprevent.Rmd’
SUMMARY: processing the following file failed:
‘using_cvdprevent.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘cvdprevent-Ex.R’ failed
The error most likely occurred in:
> ### Name: cvd_area_details
> ### Title: Area details
> ### Aliases: cvd_area_details
>
> ### ** Examples
>
> # to see details for '3 Centres PCN' (area_id = 1103) use the following:
> # get the list of tibbles from the function
> returned_list <- cvd_area_details(time_period_id = 17, area_id = 1103)
>
> # view area details
> returned_list$area_details |>
+ dplyr::select(AreaCode, AreaName)
# A tibble: 1 × 2
AreaCode AreaName
<chr> <chr>
1 U60176 3 Centres PCN
>
> # view details for the parent of this area
> returned_list$area_parent_details |>
+ dplyr::select(AreaID, AreaName, SystemLevelID)
# A tibble: 1 × 3
AreaID AreaName SystemLevelID
<int> <chr> <int>
1 7959 NHS West Yorkshire ICB - X2C4Y 8
>
> # view details for the children of this area
> returned_list$area_child_details |>
+ dplyr::select(AreaID, AreaName, SystemLevelID)
Error in UseMethod("select") :
no applicable method for 'select' applied to an object of class "NULL"
Calls: <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cvdprevent)
>
> test_check("cvdprevent")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cvd_api_functions.R:73:3'): cvd_area_nested_subsystems works ──
Names of `test` ('level_1', 'level_2', 'level_3') don't match 'level_1', 'level_2', 'level_3', 'level_4'
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘using_cvdprevent.Rmd’ using rmarkdown
Quitting from using_cvdprevent.Rmd:125-129 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'select' applied to an object of class "NULL"
---
Backtrace:
▆
1. ├─gt::gt(...)
2. │ └─"rowname" %in% names(data)
3. └─dplyr::select(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_cvdprevent.Rmd' failed with diagnostics:
no applicable method for 'select' applied to an object of class "NULL"
--- failed re-building ‘using_cvdprevent.Rmd’
SUMMARY: processing the following file failed:
‘using_cvdprevent.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cvdprevent)
>
> test_check("cvdprevent")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cvd_api_functions.R:73:3'): cvd_area_nested_subsystems works ──
Names of `test` ('level_1', 'level_2', 'level_3') don't match 'level_1', 'level_2', 'level_3', 'level_4'
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in 'cvdprevent-Ex.R' failed
The error most likely occurred in:
> ### Name: cvd_indicator_raw_data
> ### Title: Indicator raw data (JSON)
> ### Aliases: cvd_indicator_raw_data
>
> ### ** Examples
>
> # return all metric data for indicator 'AF: treatment with anticoagulants'
> # (indicator ID 7) in time period 17 at GP practice level (system level ID 5):
> cvd_indicator_raw_data(indicator_id = 7, time_period_id = 17, system_level_id = 5) |>
+ dplyr::slice_head(n = 5) |>
+ dplyr::select(AreaCode, AreaName, Value)
✖ Metric ID is invalid
Error in `dplyr::select()`:
! Can't select columns that don't exist.
✖ Column `AreaCode` doesn't exist.
Backtrace:
▆
1. ├─dplyr::select(...)
2. ├─dplyr:::select.data.frame(...)
3. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
4. │ └─tidyselect:::eval_select_impl(...)
5. │ ├─tidyselect:::with_subscript_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─tidyselect:::vars_select_eval(...)
8. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
9. │ └─tidyselect:::eval_c(expr, data_mask, context_mask)
10. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
11. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
12. │ └─tidyselect:::as_indices_sel_impl(...)
13. │ └─tidyselect:::as_indices_impl(...)
14. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
15. │ └─vctrs::vec_as_location(...)
16. └─vctrs (local) `<fn>`()
17. └─vctrs:::stop_subscript_oob(...)
18. └─vctrs:::stop_subscript(...)
19. └─rlang::abort(...)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘cvdprevent-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cvd_area_details
> ### Title: Area details
> ### Aliases: cvd_area_details
>
> ### ** Examples
>
> # to see details for '3 Centres PCN' (area_id = 1103) use the following:
> # get the list of tibbles from the function
> returned_list <- cvd_area_details(time_period_id = 17, area_id = 1103)
>
> # view area details
> returned_list$area_details |>
+ dplyr::select(AreaCode, AreaName)
# A tibble: 1 × 2
AreaCode AreaName
<chr> <chr>
1 U60176 3 Centres PCN
>
> # view details for the parent of this area
> returned_list$area_parent_details |>
+ dplyr::select(AreaID, AreaName, SystemLevelID)
# A tibble: 1 × 3
AreaID AreaName SystemLevelID
<int> <chr> <int>
1 7959 NHS West Yorkshire ICB - X2C4Y 8
>
> # view details for the children of this area
> returned_list$area_child_details |>
+ dplyr::select(AreaID, AreaName, SystemLevelID)
Error in UseMethod("select") :
no applicable method for 'select' applied to an object of class "NULL"
Calls: <Anonymous>
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cvdprevent)
>
> test_check("cvdprevent")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cvd_api_functions.R:73:3'): cvd_area_nested_subsystems works ──
Names of `test` ('level_1', 'level_2', 'level_3') don't match 'level_1', 'level_2', 'level_3', 'level_4'
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘using_cvdprevent.Rmd’ using rmarkdown
Quitting from using_cvdprevent.Rmd:125-129 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'select' applied to an object of class "NULL"
---
Backtrace:
▆
1. ├─gt::gt(...)
2. │ └─"rowname" %in% names(data)
3. └─dplyr::select(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_cvdprevent.Rmd' failed with diagnostics:
no applicable method for 'select' applied to an object of class "NULL"
--- failed re-building ‘using_cvdprevent.Rmd’
SUMMARY: processing the following file failed:
‘using_cvdprevent.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'using_cvdprevent.Rmd' using rmarkdown
Quitting from using_cvdprevent.Rmd:182-185 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'group_vars' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─gt::gt(return_list$level_2)
2. └─dplyr::group_vars(data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_cvdprevent.Rmd' failed with diagnostics:
no applicable method for 'group_vars' applied to an object of class "NULL"
--- failed re-building 'using_cvdprevent.Rmd'
SUMMARY: processing the following file failed:
'using_cvdprevent.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cvdprevent)
>
> test_check("cvdprevent")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cvd_api_functions.R:73:3'): cvd_area_nested_subsystems works ──
Names of `test` ('level_1', 'level_2', 'level_3') don't match 'level_1', 'level_2', 'level_3', 'level_4'
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13