Last updated on 2026-08-02 12:51:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 47.50 | 407.70 | 455.20 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 31.16 | 272.42 | 303.58 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 85.00 | 621.94 | 706.94 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 35.00 | 263.57 | 298.57 | OK | |
| r-devel-windows-x86_64 | 1.2.3 | 56.00 | 404.00 | 460.00 | OK | |
| r-patched-linux-x86_64 | 1.2.3 | 49.75 | 388.60 | 438.35 | OK | |
| r-release-linux-x86_64 | 1.2.3 | 45.72 | 396.62 | 442.34 | OK | |
| r-release-macos-arm64 | 1.2.3 | 11.00 | 82.00 | 93.00 | OK | |
| r-release-macos-x86_64 | 1.2.3 | 33.00 | 361.00 | 394.00 | OK | |
| r-release-windows-x86_64 | 1.2.3 | 52.00 | 438.00 | 490.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.3 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.2.3 | 33.00 | 419.00 | 452.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.2.3 | 75.00 | 565.00 | 640.00 | OK |
Version: 1.2.3
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp07lHnM’ ‘~/tmp/scratch/Rtmp0nWBhL’
‘~/tmp/scratch/Rtmp0q0FAE’ ‘~/tmp/scratch/Rtmp0xL640’
‘~/tmp/scratch/Rtmp15aCq9’ ‘~/tmp/scratch/Rtmp1Cs2xY’
‘~/tmp/scratch/Rtmp1Hzhbf’ ‘~/tmp/scratch/Rtmp1nL7Ig’
‘~/tmp/scratch/Rtmp1yDyoE’ ‘~/tmp/scratch/Rtmp2GZiQ2’
‘~/tmp/scratch/Rtmp2HQbe2’ ‘~/tmp/scratch/Rtmp2JuAst’
‘~/tmp/scratch/Rtmp4F7Ngi’ ‘~/tmp/scratch/Rtmp4egpMW’
‘~/tmp/scratch/Rtmp4mCN6g’ ‘~/tmp/scratch/Rtmp59qFBB’
‘~/tmp/scratch/Rtmp5c9HfS’ ‘~/tmp/scratch/Rtmp64zdjv’
‘~/tmp/scratch/Rtmp6OmvAE’ ‘~/tmp/scratch/Rtmp6VnALA’
‘~/tmp/scratch/Rtmp7HUlx8’ ‘~/tmp/scratch/Rtmp7OERBT’
‘~/tmp/scratch/Rtmp86wbr1’ ‘~/tmp/scratch/Rtmp8RXrCl’
‘~/tmp/scratch/Rtmp8UPZPw’ ‘~/tmp/scratch/Rtmp8wJEVv’
‘~/tmp/scratch/Rtmp9M58nT’ ‘~/tmp/scratch/Rtmp9h1V5K’
‘~/tmp/scratch/Rtmp9iBh28’ ‘~/tmp/scratch/RtmpABGuW9’
‘~/tmp/scratch/RtmpAOaD81’ ‘~/tmp/scratch/RtmpAeVfBO’
‘~/tmp/scratch/RtmpBtNAfF’ ‘~/tmp/scratch/RtmpCDMcNv’
‘~/tmp/scratch/RtmpCZXvoa’ ‘~/tmp/scratch/RtmpCZerJf’
‘~/tmp/scratch/RtmpCqosdP’ ‘~/tmp/scratch/RtmpDFL0QI’
‘~/tmp/scratch/RtmpDGtC3K’ ‘~/tmp/scratch/RtmpDIXmGU’
‘~/tmp/scratch/RtmpDo93Eb’ ‘~/tmp/scratch/RtmpEHfqvU’
‘~/tmp/scratch/RtmpEIEFnQ’ ‘~/tmp/scratch/RtmpEIikNV’
‘~/tmp/scratch/RtmpEvp1GM’ ‘~/tmp/scratch/RtmpF9wBgQ’
‘~/tmp/scratch/RtmpFCWBYE’ ‘~/tmp/scratch/RtmpFZ7xki’
‘~/tmp/scratch/RtmpFbgBqM’ ‘~/tmp/scratch/RtmpFon6Bi’
‘~/tmp/scratch/RtmpG3bJBk’ ‘~/tmp/scratch/RtmpG4k8LI’
‘~/tmp/scratch/RtmpGCnMUC’ ‘~/tmp/scratch/RtmpGHzJ4D’
‘~/tmp/scratch/RtmpGXI77s’ ‘~/tmp/scratch/RtmpGrcrdd’
‘~/tmp/scratch/RtmpHDF9A0’ ‘~/tmp/scratch/RtmpHXvTUI’
‘~/tmp/scratch/RtmpHcue9Q’ ‘~/tmp/scratch/RtmpHlbYiX’
‘~/tmp/scratch/RtmpI4AyEi’ ‘~/tmp/scratch/RtmpJ327i9’
‘~/tmp/scratch/RtmpJZLfoS’ ‘~/tmp/scratch/RtmpK3L0uR’
‘~/tmp/scratch/RtmpKIlZIP’ ‘~/tmp/scratch/RtmpKXjIi0’
‘~/tmp/scratch/RtmpLGhPPH’ ‘~/tmp/scratch/RtmpLNBEJ7’
‘~/tmp/scratch/RtmpLktTAk’ ‘~/tmp/scratch/RtmpMdNNwI’
‘~/tmp/scratch/RtmpMxApnP’ ‘~/tmp/scratch/RtmpOVt5w3’
‘~/tmp/scratch/RtmpOdrBqd’ ‘~/tmp/scratch/RtmpP3t7Ok’
‘~/tmp/scratch/RtmpPWJFFW’ ‘~/tmp/scratch/RtmpPuvHAs’
‘~/tmp/scratch/RtmpPvOYkZ’ ‘~/tmp/scratch/RtmpQvjJQm’
‘~/tmp/scratch/RtmpQyTLY3’ ‘~/tmp/scratch/RtmpS8BqQw’
‘~/tmp/scratch/RtmpSBuv8a’ ‘~/tmp/scratch/RtmpSFtiZ2’
‘~/tmp/scratch/RtmpT25VDt’ ‘~/tmp/scratch/RtmpTxPnEd’
‘~/tmp/scratch/RtmpU7kREY’ ‘~/tmp/scratch/RtmpURTlFi’
‘~/tmp/scratch/RtmpUh31Dh’ ‘~/tmp/scratch/RtmpUpnFnU’
‘~/tmp/scratch/RtmpUucVEL’ ‘~/tmp/scratch/RtmpV8aOwx’
‘~/tmp/scratch/RtmpW1PolY’ ‘~/tmp/scratch/RtmpW8Lb1c’
‘~/tmp/scratch/RtmpWSPz8H’ ‘~/tmp/scratch/RtmpWV6vFJ’
‘~/tmp/scratch/RtmpWX474J’ ‘~/tmp/scratch/RtmpXK6ZjA’
‘~/tmp/scratch/RtmpXiqwFw’ ‘~/tmp/scratch/RtmpY4SQ5z’
‘~/tmp/scratch/RtmpYVdq6O’ ‘~/tmp/scratch/RtmpYcKiCz’
‘~/tmp/scratch/RtmpYcsT7k’ ‘~/tmp/scratch/RtmpYhvnT4’
‘~/tmp/scratch/RtmpZdORr0’ ‘~/tmp/scratch/RtmpZfEisu’
‘~/tmp/scratch/RtmpZoFeiO’ ‘~/tmp/scratch/RtmpagnGl0’
‘~/tmp/scratch/RtmpboL82A’ ‘~/tmp/scratch/RtmpbxCzNG’
‘~/tmp/scratch/RtmpcKLarU’ ‘~/tmp/scratch/Rtmpd1mEuX’
‘~/tmp/scratch/RtmpdCDC7q’ ‘~/tmp/scratch/RtmpdRBmrC’
‘~/tmp/scratch/RtmpdlVlAp’ ‘~/tmp/scratch/RtmpeKt5OS’
‘~/tmp/scratch/RtmpeT6oJa’ ‘~/tmp/scratch/Rtmpf8kNKq’
‘~/tmp/scratch/RtmpfDUUmE’ ‘~/tmp/scratch/RtmpfNEFXB’
‘~/tmp/scratch/Rtmpg4ynJx’ ‘~/tmp/scratch/RtmpgOem01’
‘~/tmp/scratch/RtmpgOuaeH’ ‘~/tmp/scratch/Rtmpgnfuob’
‘~/tmp/scratch/RtmphxPd77’ ‘~/tmp/scratch/Rtmpi11puH’
‘~/tmp/scratch/RtmpikClyl’ ‘~/tmp/scratch/Rtmpimcp4E’
‘~/tmp/scratch/RtmpiwmsPM’ ‘~/tmp/scratch/RtmpjHikmy’
‘~/tmp/scratch/RtmpjLvrZ6’ ‘~/tmp/scratch/RtmpjVtSPP’
‘~/tmp/scratch/RtmpjWLnpE’ ‘~/tmp/scratch/Rtmpjz1LtF’
‘~/tmp/scratch/RtmpkAmPLH’ ‘~/tmp/scratch/RtmpkbN1lR’
‘~/tmp/scratch/Rtmplipynw’ ‘~/tmp/scratch/RtmpmBSP3h’
‘~/tmp/scratch/RtmpmMRrv2’ ‘~/tmp/scratch/RtmpmtOqSq’
‘~/tmp/scratch/Rtmpn4QQiN’ ‘~/tmp/scratch/RtmpnCGK49’
‘~/tmp/scratch/RtmpnNZkaF’ ‘~/tmp/scratch/RtmpnRpHxH’
‘~/tmp/scratch/RtmpoLaouG’ ‘~/tmp/scratch/RtmpoPcitT’
‘~/tmp/scratch/RtmpodYK3N’ ‘~/tmp/scratch/RtmpohBnc4’
‘~/tmp/scratch/RtmppUmBdw’ ‘~/tmp/scratch/RtmppojygI’
‘~/tmp/scratch/RtmpqCNpxU’ ‘~/tmp/scratch/Rtmpqj42u8’
‘~/tmp/scratch/Rtmpqq0azJ’ ‘~/tmp/scratch/Rtmps8K1qg’
‘~/tmp/scratch/RtmpsM4Tmi’ ‘~/tmp/scratch/RtmpsrrZ0a’
‘~/tmp/scratch/RtmptIjQ2a’ ‘~/tmp/scratch/RtmptNbjkA’
‘~/tmp/scratch/RtmptxHbP7’ ‘~/tmp/scratch/RtmpuXV4aV’
‘~/tmp/scratch/Rtmpv01em4’ ‘~/tmp/scratch/RtmpvB8snk’
‘~/tmp/scratch/RtmpvJOVbP’ ‘~/tmp/scratch/RtmpvTTbs1’
‘~/tmp/scratch/Rtmpvf08Ob’ ‘~/tmp/scratch/Rtmpw7fKSk’
‘~/tmp/scratch/Rtmpw8J3Zq’ ‘~/tmp/scratch/RtmpwYmDGE’
‘~/tmp/scratch/RtmpxnLzMh’ ‘~/tmp/scratch/RtmpytC3NC’
‘~/tmp/scratch/Rtmpz4hTvG’ ‘~/tmp/scratch/xvfb-run.02Lpr9’
‘~/tmp/scratch/xvfb-run.0Yo5Cw’ ‘~/tmp/scratch/xvfb-run.11rD8P’
‘~/tmp/scratch/xvfb-run.13KC6e’ ‘~/tmp/scratch/xvfb-run.1NIZfl’
‘~/tmp/scratch/xvfb-run.1UO4uX’ ‘~/tmp/scratch/xvfb-run.4BpU35’
‘~/tmp/scratch/xvfb-run.51rQb7’ ‘~/tmp/scratch/xvfb-run.5dUnr3’
‘~/tmp/scratch/xvfb-run.5vyqfZ’ ‘~/tmp/scratch/xvfb-run.696Zxe’
‘~/tmp/scratch/xvfb-run.6b9qah’ ‘~/tmp/scratch/xvfb-run.7W3n3O’
‘~/tmp/scratch/xvfb-run.7Xveul’ ‘~/tmp/scratch/xvfb-run.8sKPCM’
‘~/tmp/scratch/xvfb-run.A5SIwB’ ‘~/tmp/scratch/xvfb-run.Aiwv2l’
‘~/tmp/scratch/xvfb-run.BD84DI’ ‘~/tmp/scratch/xvfb-run.C58cyZ’
‘~/tmp/scratch/xvfb-run.FZyDeX’ ‘~/tmp/scratch/xvfb-run.FxCzE6’
‘~/tmp/scratch/xvfb-run.HVwKve’ ‘~/tmp/scratch/xvfb-run.HwUP59’
‘~/tmp/scratch/xvfb-run.JewtUu’ ‘~/tmp/scratch/xvfb-run.KVqxNF’
‘~/tmp/scratch/xvfb-run.Li42Ob’ ‘~/tmp/scratch/xvfb-run.NgAxAX’
‘~/tmp/scratch/xvfb-run.OJKFg6’ ‘~/tmp/scratch/xvfb-run.OQQAV9’
‘~/tmp/scratch/xvfb-run.OYY6r9’ ‘~/tmp/scratch/xvfb-run.OsUdKv’
‘~/tmp/scratch/xvfb-run.PQVniO’ ‘~/tmp/scratch/xvfb-run.QLK2zN’
‘~/tmp/scratch/xvfb-run.RO1waR’ ‘~/tmp/scratch/xvfb-run.RxsGT1’
‘~/tmp/scratch/xvfb-run.TBgmsC’ ‘~/tmp/scratch/xvfb-run.TTQzrD’
‘~/tmp/scratch/xvfb-run.TisDEQ’ ‘~/tmp/scratch/xvfb-run.VpJlTD’
‘~/tmp/scratch/xvfb-run.X1h9fc’ ‘~/tmp/scratch/xvfb-run.YLfgpa’
‘~/tmp/scratch/xvfb-run.ZbcLQa’ ‘~/tmp/scratch/xvfb-run.bAX1C3’
‘~/tmp/scratch/xvfb-run.bhSZic’ ‘~/tmp/scratch/xvfb-run.d2HUL4’
‘~/tmp/scratch/xvfb-run.efiEEr’ ‘~/tmp/scratch/xvfb-run.fDRnD8’
‘~/tmp/scratch/xvfb-run.heM5ID’ ‘~/tmp/scratch/xvfb-run.hkixBG’
‘~/tmp/scratch/xvfb-run.hyGGhn’ ‘~/tmp/scratch/xvfb-run.iKFviv’
‘~/tmp/scratch/xvfb-run.iWpyjI’ ‘~/tmp/scratch/xvfb-run.izcP6X’
‘~/tmp/scratch/xvfb-run.l2o2RG’ ‘~/tmp/scratch/xvfb-run.nD5G22’
‘~/tmp/scratch/xvfb-run.nYijEm’ ‘~/tmp/scratch/xvfb-run.o185AE’
‘~/tmp/scratch/xvfb-run.ooP43h’ ‘~/tmp/scratch/xvfb-run.p6Syyd’
‘~/tmp/scratch/xvfb-run.pCOs4v’ ‘~/tmp/scratch/xvfb-run.pfosJv’
‘~/tmp/scratch/xvfb-run.qRCqKF’ ‘~/tmp/scratch/xvfb-run.qwkFIZ’
‘~/tmp/scratch/xvfb-run.slX813’ ‘~/tmp/scratch/xvfb-run.szxiSv’
‘~/tmp/scratch/xvfb-run.tDUad2’ ‘~/tmp/scratch/xvfb-run.uAVPb5’
‘~/tmp/scratch/xvfb-run.uLRTea’ ‘~/tmp/scratch/xvfb-run.vFAzIt’
‘~/tmp/scratch/xvfb-run.viosRc’ ‘~/tmp/scratch/xvfb-run.vnAtyE’
‘~/tmp/scratch/xvfb-run.wRhbKg’ ‘~/tmp/scratch/xvfb-run.wcj5Te’
‘~/tmp/scratch/xvfb-run.xDcSZo’ ‘~/tmp/scratch/xvfb-run.yRamEG’
‘~/tmp/scratch/xvfb-run.ytevrK’ ‘~/tmp/scratch/xvfb-run.zNlSrf’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.3
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘dartR.base-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.filter.ld
> ### Title: Filters loci based on linkage disequilibrium (LD)
> ### Aliases: gl.filter.ld
>
> ### ** Examples
>
> if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) {
+ test <- gl.filter.callrate(platypus.gl, threshold = 1)
+ test <- gl.filter.monomorphs(test)
+ report <- gl.report.ld.map(test)
+ res <- gl.filter.ld(x=test,ld.report = report)
+ }
Starting gl.filter.callrate
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Warning: Data may include monomorphic loci in call rate
calculations for filtering
Recalculating Call Rate
Removing loci based on Call Rate, threshold = 1
Completed: gl.filter.callrate
Starting gl.filter.monomorphs
Processing genlight object with SNP data
Identifying monomorphic loci
Removing monomorphic loci and loci with all missing
data
Completed: gl.filter.monomorphs
Starting gl.report.ld.map
Processing genlight object with SNP data
There is no information in the chromosome/position slot of the genlight object.
Assigning the same chromosome ('1') to all the SNPs in the dataset.
Assigning a sequence from 1 to n loci as the position of each SNP.
Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat)
2: gl.report.ld.map(test)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64