CRAN Package Check Results for Package haplo.stats

Last updated on 2026-08-01 01:52:33 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.9.8.7	8.74	124.02	132.76	ERROR
r-devel-linux-x86_64-debian-gcc	1.9.8.7	6.51	79.06	85.57	ERROR
r-devel-linux-x86_64-fedora-clang	1.9.8.7			127.54	ERROR
r-devel-linux-x86_64-fedora-gcc	1.9.8.7			254.07	ERROR
r-devel-windows-x86_64	1.9.8.7	14.00	111.00	125.00	ERROR
r-patched-linux-x86_64	1.9.8.7	10.50	130.32	140.82	OK
r-release-linux-x86_64	1.9.8.7	8.40	128.61	137.01	OK
r-release-macos-arm64	1.9.8.7	3.00	65.00	68.00	OK
r-release-macos-x86_64	1.9.8.7	8.00	516.00	524.00	OK
r-release-windows-x86_64	1.9.8.7	13.00	121.00	134.00	OK
r-oldrel-macos-arm64	1.9.8.7	2.00	66.00	68.00	OK
r-oldrel-macos-x86_64	1.9.8.7	8.00	407.00	415.00	OK
r-oldrel-windows-x86_64	1.9.8.7	17.00	192.00	209.00	OK

Check Details

Version: 1.9.8.7
Check: tests
Result: ERROR Running ‘testthat.R’ [69s/87s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(haplo.stats) Loading required package: arsenal Loading required package: MASS > > test_check("haplo.stats") Saving _problems/test.haplo.cc-52.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] == Failed tests ================================================================ -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc ----------------- Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`. Differences: Attributes: < Component "row.names": Numeric: lengths (219, 224) differ > Component "DQB": Lengths (219, 224) differ (string compare on first 219) Component "DQB": 52 string mismatches Component "DRB": Lengths (219, 224) differ (string compare on first 219) Component "DRB": 130 string mismatches Component "B": Lengths (219, 224) differ (string compare on first 219) Component "B": 187 string mismatches Component "Hap-Score": Numeric: lengths (219, 224) differ Component "p-val": Numeric: lengths (219, 224) differ ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.9.8.7
Check: tests
Result: ERROR Running ‘testthat.R’ [37s/47s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(haplo.stats) Loading required package: arsenal Loading required package: MASS > > test_check("haplo.stats") Saving _problems/test.haplo.cc-52.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] == Failed tests ================================================================ -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc ----------------- Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`. Differences: Attributes: < Component "row.names": Numeric: lengths (219, 224) differ > Component "DQB": Lengths (219, 224) differ (string compare on first 219) Component "DQB": 52 string mismatches Component "DRB": Lengths (219, 224) differ (string compare on first 219) Component "DRB": 130 string mismatches Component "B": Lengths (219, 224) differ (string compare on first 219) Component "B": 187 string mismatches Component "Hap-Score": Numeric: lengths (219, 224) differ Component "p-val": Numeric: lengths (219, 224) differ ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.9.8.7
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0N6u6y’ ‘~/tmp/scratch/Rtmp0VtyEM’ ‘~/tmp/scratch/Rtmp1CnwVn’ ‘~/tmp/scratch/Rtmp1kq7ZQ’ ‘~/tmp/scratch/Rtmp3K472T’ ‘~/tmp/scratch/Rtmp491Vvv’ ‘~/tmp/scratch/Rtmp4Dj9FW’ ‘~/tmp/scratch/Rtmp4btsxs’ ‘~/tmp/scratch/Rtmp4deYUV’ ‘~/tmp/scratch/Rtmp4yvDha’ ‘~/tmp/scratch/Rtmp5hDzYp’ ‘~/tmp/scratch/Rtmp681O1B’ ‘~/tmp/scratch/Rtmp6JWgJ4’ ‘~/tmp/scratch/Rtmp6gZDpK’ ‘~/tmp/scratch/Rtmp6sW8uF’ ‘~/tmp/scratch/Rtmp8q0BlJ’ ‘~/tmp/scratch/Rtmp8q3Yib’ ‘~/tmp/scratch/Rtmp8yUR05’ ‘~/tmp/scratch/Rtmp91yaq0’ ‘~/tmp/scratch/Rtmp9CqIMN’ ‘~/tmp/scratch/Rtmp9gPhBJ’ ‘~/tmp/scratch/RtmpAxjDqg’ ‘~/tmp/scratch/RtmpB6LzeH’ ‘~/tmp/scratch/RtmpBBJBgN’ ‘~/tmp/scratch/RtmpBHTjDx’ ‘~/tmp/scratch/RtmpBn44C0’ ‘~/tmp/scratch/RtmpCracMV’ ‘~/tmp/scratch/RtmpDOQ7gB’ ‘~/tmp/scratch/RtmpESFMBW’ ‘~/tmp/scratch/RtmpEZPGiO’ ‘~/tmp/scratch/RtmpF1S9Vx’ ‘~/tmp/scratch/RtmpFFkGXQ’ ‘~/tmp/scratch/RtmpFdL7pF’ ‘~/tmp/scratch/RtmpFpNHbd’ ‘~/tmp/scratch/RtmpG3c9kF’ ‘~/tmp/scratch/RtmpG93N8y’ ‘~/tmp/scratch/RtmpGFH1xg’ ‘~/tmp/scratch/RtmpGNklQQ’ ‘~/tmp/scratch/RtmpGlLPuR’ ‘~/tmp/scratch/RtmpGzvqMR’ ‘~/tmp/scratch/RtmpH0S30I’ ‘~/tmp/scratch/RtmpIDyV86’ ‘~/tmp/scratch/RtmpIIklrs’ ‘~/tmp/scratch/RtmpIJab1n’ ‘~/tmp/scratch/RtmpIXKjvW’ ‘~/tmp/scratch/RtmpIbaN4x’ ‘~/tmp/scratch/RtmpJq9r9r’ ‘~/tmp/scratch/RtmpKDmIwy’ ‘~/tmp/scratch/RtmpKOvxWN’ ‘~/tmp/scratch/RtmpKmTg9O’ ‘~/tmp/scratch/RtmpL111KB’ ‘~/tmp/scratch/RtmpLnIlMP’ ‘~/tmp/scratch/RtmpMuSzpm’ ‘~/tmp/scratch/RtmpMxZW4I’ ‘~/tmp/scratch/RtmpNQ3Erw’ ‘~/tmp/scratch/RtmpNZEirs’ ‘~/tmp/scratch/RtmpP3J7GV’ ‘~/tmp/scratch/RtmpPUnKdc’ ‘~/tmp/scratch/RtmpPY9hc8’ ‘~/tmp/scratch/RtmpQ4DDP2’ ‘~/tmp/scratch/RtmpQ7VFFG’ ‘~/tmp/scratch/RtmpQMXgRx’ ‘~/tmp/scratch/RtmpRf69t7’ ‘~/tmp/scratch/RtmpRhfKyD’ ‘~/tmp/scratch/RtmpShstLM’ ‘~/tmp/scratch/RtmpSjx3Kr’ ‘~/tmp/scratch/RtmpUeEcsQ’ ‘~/tmp/scratch/RtmpVE59bt’ ‘~/tmp/scratch/RtmpVZXfMY’ ‘~/tmp/scratch/RtmpVuLzry’ ‘~/tmp/scratch/RtmpWV3LmT’ ‘~/tmp/scratch/RtmpXO4scr’ ‘~/tmp/scratch/RtmpXQ12kc’ ‘~/tmp/scratch/RtmpYqpUBN’ ‘~/tmp/scratch/RtmpZGiTCV’ ‘~/tmp/scratch/RtmpaENmaV’ ‘~/tmp/scratch/RtmpbRzSl9’ ‘~/tmp/scratch/RtmpcHZBTX’ ‘~/tmp/scratch/RtmpcKzaQQ’ ‘~/tmp/scratch/RtmpcR4PwV’ ‘~/tmp/scratch/RtmpcsXLNM’ ‘~/tmp/scratch/Rtmpcv5Y4Q’ ‘~/tmp/scratch/RtmpdXszNG’ ‘~/tmp/scratch/Rtmpdqwr0t’ ‘~/tmp/scratch/RtmpeKlUH5’ ‘~/tmp/scratch/RtmpeXfGi9’ ‘~/tmp/scratch/Rtmpep0V0x’ ‘~/tmp/scratch/Rtmpf7qQpW’ ‘~/tmp/scratch/RtmpfC6v1o’ ‘~/tmp/scratch/RtmpgeNbLl’ ‘~/tmp/scratch/RtmpgedBUO’ ‘~/tmp/scratch/RtmphZCvFI’ ‘~/tmp/scratch/Rtmpj7BvQN’ ‘~/tmp/scratch/RtmpjCNubX’ ‘~/tmp/scratch/RtmpjCU51D’ ‘~/tmp/scratch/RtmpkQPv01’ ‘~/tmp/scratch/RtmpmDANJH’ ‘~/tmp/scratch/RtmpmI1Wg6’ ‘~/tmp/scratch/RtmpmKybVd’ ‘~/tmp/scratch/RtmpnPYUPV’ ‘~/tmp/scratch/RtmpnX034W’ ‘~/tmp/scratch/RtmpncboYQ’ ‘~/tmp/scratch/RtmpnpvPVS’ ‘~/tmp/scratch/RtmpnruDOA’ ‘~/tmp/scratch/Rtmpo0pRqp’ ‘~/tmp/scratch/RtmpoKC2ax’ ‘~/tmp/scratch/RtmpoxWo09’ ‘~/tmp/scratch/Rtmpp2RhbB’ ‘~/tmp/scratch/RtmppEKwGB’ ‘~/tmp/scratch/Rtmppv5NoQ’ ‘~/tmp/scratch/RtmppzdRMl’ ‘~/tmp/scratch/RtmppziRWP’ ‘~/tmp/scratch/Rtmpqcl6Bb’ ‘~/tmp/scratch/Rtmpr38kmm’ ‘~/tmp/scratch/Rtmpr7iAMC’ ‘~/tmp/scratch/RtmprQ2XcM’ ‘~/tmp/scratch/RtmprpoKZ5’ ‘~/tmp/scratch/Rtmpt3ffoO’ ‘~/tmp/scratch/RtmpusoXOo’ ‘~/tmp/scratch/Rtmpv1QHGD’ ‘~/tmp/scratch/Rtmpw1tZdh’ ‘~/tmp/scratch/Rtmpw8gPik’ ‘~/tmp/scratch/Rtmpx9HtqF’ ‘~/tmp/scratch/RtmpydzPHv’ ‘~/tmp/scratch/RtmpygUQfX’ ‘~/tmp/scratch/RtmpzP3rKR’ ‘~/tmp/scratch/RtmpzvIJJ4’ ‘~/tmp/scratch/xvfb-run.4kFnBj’ ‘~/tmp/scratch/xvfb-run.4yjLKQ’ ‘~/tmp/scratch/xvfb-run.5UymdN’ ‘~/tmp/scratch/xvfb-run.7Am0i9’ ‘~/tmp/scratch/xvfb-run.83IgCD’ ‘~/tmp/scratch/xvfb-run.Aj9OAY’ ‘~/tmp/scratch/xvfb-run.AqdO7v’ ‘~/tmp/scratch/xvfb-run.BZhUG0’ ‘~/tmp/scratch/xvfb-run.BalbSJ’ ‘~/tmp/scratch/xvfb-run.CNCiZn’ ‘~/tmp/scratch/xvfb-run.CVxjl3’ ‘~/tmp/scratch/xvfb-run.Cb5Sel’ ‘~/tmp/scratch/xvfb-run.D5qLXG’ ‘~/tmp/scratch/xvfb-run.DwxVFN’ ‘~/tmp/scratch/xvfb-run.EciUwo’ ‘~/tmp/scratch/xvfb-run.GKhDa2’ ‘~/tmp/scratch/xvfb-run.Gr0ytY’ ‘~/tmp/scratch/xvfb-run.He9zBC’ ‘~/tmp/scratch/xvfb-run.IK1qAN’ ‘~/tmp/scratch/xvfb-run.Ixtgvt’ ‘~/tmp/scratch/xvfb-run.KSwGxz’ ‘~/tmp/scratch/xvfb-run.LERHSG’ ‘~/tmp/scratch/xvfb-run.NJayKc’ ‘~/tmp/scratch/xvfb-run.NUIkED’ ‘~/tmp/scratch/xvfb-run.PEg2rK’ ‘~/tmp/scratch/xvfb-run.Q3ArOt’ ‘~/tmp/scratch/xvfb-run.Q6UNiF’ ‘~/tmp/scratch/xvfb-run.RibGWk’ ‘~/tmp/scratch/xvfb-run.S6LMbv’ ‘~/tmp/scratch/xvfb-run.TpgdA7’ ‘~/tmp/scratch/xvfb-run.U6RfBC’ ‘~/tmp/scratch/xvfb-run.UNMYmT’ ‘~/tmp/scratch/xvfb-run.VMABNR’ ‘~/tmp/scratch/xvfb-run.VQgbvw’ ‘~/tmp/scratch/xvfb-run.X7TDZo’ ‘~/tmp/scratch/xvfb-run.ceww8R’ ‘~/tmp/scratch/xvfb-run.ddOezF’ ‘~/tmp/scratch/xvfb-run.dg3B8O’ ‘~/tmp/scratch/xvfb-run.epTauj’ ‘~/tmp/scratch/xvfb-run.esXH0R’ ‘~/tmp/scratch/xvfb-run.evHOAj’ ‘~/tmp/scratch/xvfb-run.g0bkMT’ ‘~/tmp/scratch/xvfb-run.gpLZ2X’ ‘~/tmp/scratch/xvfb-run.iXu1XO’ ‘~/tmp/scratch/xvfb-run.ic12mV’ ‘~/tmp/scratch/xvfb-run.n5mJ7U’ ‘~/tmp/scratch/xvfb-run.n6wZ6d’ ‘~/tmp/scratch/xvfb-run.o8zymd’ ‘~/tmp/scratch/xvfb-run.qn6sqO’ ‘~/tmp/scratch/xvfb-run.rVgFMA’ ‘~/tmp/scratch/xvfb-run.rYx8FA’ ‘~/tmp/scratch/xvfb-run.rc0e6g’ ‘~/tmp/scratch/xvfb-run.relKHq’ ‘~/tmp/scratch/xvfb-run.rjXqkk’ ‘~/tmp/scratch/xvfb-run.sqRGew’ ‘~/tmp/scratch/xvfb-run.w4Sj74’ ‘~/tmp/scratch/xvfb-run.w6rylD’ ‘~/tmp/scratch/xvfb-run.x8phzE’ ‘~/tmp/scratch/xvfb-run.xQSWOF’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.9.8.7
Check: tests
Result: ERROR Running ‘testthat.R’ [74s/74s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(haplo.stats) Loading required package: arsenal Loading required package: MASS > > test_check("haplo.stats") Saving _problems/test.haplo.cc-52.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] == Failed tests ================================================================ -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc ----------------- Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`. Differences: Attributes: < Component "row.names": Numeric: lengths (219, 224) differ > Component "DQB": Lengths (219, 224) differ (string compare on first 219) Component "DQB": 52 string mismatches Component "DRB": Lengths (219, 224) differ (string compare on first 219) Component "DRB": 130 string mismatches Component "B": Lengths (219, 224) differ (string compare on first 219) Component "B": 187 string mismatches Component "Hap-Score": Numeric: lengths (219, 224) differ Component "p-val": Numeric: lengths (219, 224) differ ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.9.8.7
Check: tests
Result: ERROR Running ‘testthat.R’ [49s/49s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(haplo.stats) Loading required package: arsenal Loading required package: MASS > > test_check("haplo.stats") Saving _problems/test.haplo.cc-52.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] == Failed tests ================================================================ -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc ----------------- Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`. Differences: Attributes: < Component "row.names": Numeric: lengths (219, 224) differ > Component "DQB": Lengths (219, 224) differ (string compare on first 219) Component "DQB": 52 string mismatches Component "DRB": Lengths (219, 224) differ (string compare on first 219) Component "DRB": 130 string mismatches Component "B": Lengths (219, 224) differ (string compare on first 219) Component "B": 187 string mismatches Component "Hap-Score": Numeric: lengths (219, 224) differ Component "p-val": Numeric: lengths (219, 224) differ ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.9.8.7
Check: tests
Result: ERROR Running 'testthat.R' [37s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(haplo.stats) Loading required package: arsenal Loading required package: MASS > > test_check("haplo.stats") Saving _problems/test.haplo.cc-52.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] == Failed tests ================================================================ -- Failure ('test.haplo.cc.R:52:3'): Data.frames from haplo.cc ----------------- Expected `cc.hla.adj$cc.df` to equal `cc.hla.adj.save$cc.df`. Differences: Attributes: < Component "row.names": Numeric: lengths (219, 224) differ > Component "DQB": Lengths (219, 224) differ (string compare on first 219) Component "DQB": 52 string mismatches Component "DRB": Lengths (219, 224) differ (string compare on first 219) Component "DRB": 130 string mismatches Component "B": Lengths (219, 224) differ (string compare on first 219) Component "B": 187 string mismatches Component "Hap-Score": Numeric: lengths (219, 224) differ Component "p-val": Numeric: lengths (219, 224) differ ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64