Last updated on 2026-03-19 12:54:11 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.4 | 103.96 | 497.95 | 601.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.4 | 61.38 | 390.94 | 452.32 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.4 | 160.00 | 752.18 | 912.18 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.4 | 172.00 | 773.79 | 945.79 | OK | |
| r-devel-macos-arm64 | 1.4.4 | 20.00 | 90.00 | 110.00 | OK | |
| r-devel-windows-x86_64 | 1.4.4 | 122.00 | 454.00 | 576.00 | ERROR | |
| r-patched-linux-x86_64 | 1.4.4 | 81.27 | 507.75 | 589.02 | OK | |
| r-release-linux-x86_64 | 1.4.4 | 85.94 | 503.35 | 589.29 | OK | |
| r-release-macos-arm64 | 1.4.4 | OK | ||||
| r-release-macos-x86_64 | 1.4.4 | 54.00 | 365.00 | 419.00 | OK | |
| r-release-windows-x86_64 | 1.4.4 | 116.00 | 470.00 | 586.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.4.4 | 54.00 | 356.00 | 410.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.4 | 148.00 | 594.00 | 742.00 | OK |
Version: 1.4.4
Check: tests
Result: ERROR
Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> # to run manually
> # test_dir("/Density secr 4.5/ipsecr/tests")
>
> test_check("ipsecr")
Loading required package: ipsecr
Loading required package: secr
This is secr 5.4.2. For overview type ?secr
This is ipsecr 1.4.4. For overview type ?ipsecr
Checking data
Preparing density design matrix
Finding initial parameter values...
Initial values D = 6.1956, g0 = 0.18949, sigma = 28.9877
Fitting box 1 ...
D lambda0 sigma
min 1.52384 -1.860194 3.066872
max 2.12384 -1.260194 3.666872
Fitting box 2 ...
D lambda0 sigma
min 1.739366 -1.395321 3.319872
max 1.839366 -1.295321 3.419872
Fitting box 3 ...
D lambda0 sigma
min 1.753091 -1.469715 3.323744
max 1.853091 -1.369715 3.423744
Simulations per vertex, by box : 60, 40, 60
Simulating for variance ...
500 variance simulations successful
Completed in 23.55 seconds at 14:56:11 17 Mar 2026
[1] "ipsecr.fit( capthist = ch, mask = msk, detectfn = HHN, details = list(var.nsim = 500, boxsize1 = 0.3, dev.max = c(0.005, 0.005)), verbose = TRUE, ncores = 1 )"
ipsecr 1.4.4, 14:55:47 17 Mar 2026, 23.55 seconds
Detector type single
Detector number 40
Average spacing 30 m
x-range 365 455 m
y-range 365 635 m
N animals : 37
N detections : 83
N occasions : 5
Mask area : 13.66625 ha
Model : D~1 lambda0~1 sigma~1
Fixed (real) : none
Detection fn : hazard halfnormal
Distribution : poisson
N parameters : 3
Design points : 11
Simulations per point for each box
1 60
2 40
3 60
Beta parameters (coefficients)
beta SE.beta lcl ucl
D 1.803105 0.2112888 1.388986 2.2172230
lambda0 -1.416582 0.2579696 -1.922194 -0.9109713
sigma 3.369799 0.1223255 3.130045 3.6095525
Variance-covariance matrix of beta parameters
D lambda0 sigma
D 0.044642952 0.003728399 -0.01363963
lambda0 0.003728399 0.066548317 -0.01366352
sigma -0.013639634 -0.013663522 0.01496353
Variance bootstrap
target nsim simulated SE.simulated q025 median
logn 3.6109179 500 3.6038249 0.0003017533 3.3131115 3.6109179
cloglogp -0.5185504 500 -0.5204132 0.0002258804 -0.7672123 -0.5144371
logRPSV 3.1845502 500 3.1870661 0.0001733235 3.0079319 3.1857435
q975
logn 3.8918203
cloglogp -0.3173856
logRPSV 3.3497604
Fitted (real) parameters evaluated at base levels of covariates
link estimate SE.estimate lcl ucl
D log 6.0684585 1.29664150 4.0107819 9.1817979
lambda0 log 0.2425415 0.06362387 0.1462857 0.4021335
sigma log 29.0726786 3.56967573 22.8750147 36.9495125
Reading layer `OVforest' from data source
`D:\RCompile\CRANpkg\lib\4.6\secr\extdata\OVforest.shp' using driver `ESRI Shapefile'
Simple feature collection with 3 features and 1 field
Geometry type: MULTIPOLYGON
Dimension: XY
Bounding box: xmin: 2674402 ymin: 5982130 xmax: 2675402 ymax: 5983130
Projected CRS: NZGD49 / New Zealand Map Grid
Flavor: r-devel-windows-x86_64