Last updated on 2026-01-08 12:49:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.04 | 246.46 | 259.50 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.48 | 271.46 | 281.94 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 27.00 | 350.69 | 377.69 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 194.00 | 214.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 14.99 | 276.36 | 291.35 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.05 | 254.30 | 269.35 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 503.00 | 513.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 20.00 | 190.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 187.00 | 197.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 23.00 | 248.00 | 271.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/456s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.045, elapsed: 2.482 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.515, system: 0.055, elapsed: 14.204 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.018, elapsed: 1.152 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.788, system: 0.732, elapsed: 44.941 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.003, elapsed: 0.172 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.933, system: 0.884, elapsed: 63.790 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.622, system: 0.051, elapsed: 1.533 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.653, system: 0.097, elapsed: 13.866 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.016, elapsed: 0.743 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.753, system: 0.751, elapsed: 82.550 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.003, elapsed: 0.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.137, system: 0.965, elapsed: 99.516 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.538, system: 0.029, elapsed: 2.148 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.544, system: 0.057, elapsed: 12.489 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.015, elapsed: 0.979 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.816, system: 0.809, elapsed: 122.661 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.304 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.263, system: 0.258, elapsed: 1.550 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.228, system: 1.211, elapsed: 141.137 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.605, system: 0.045, elapsed: 3.298 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.648, system: 0.102, elapsed: 15.275 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.018, elapsed: 0.803 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.872, system: 0.839, elapsed: 104.767 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.180 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.460, system: 0.560, elapsed: 18.641 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.650, system: 1.595, elapsed: 144.062 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/132s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.052, elapsed: 2.362 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.701, system: 0.214, elapsed: 15.281 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.017, elapsed: 0.352 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.317, system: 0.424, elapsed: 6.731 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.004, elapsed: 0.263 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.561, system: 0.741, elapsed: 25.895 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.645, system: 0.032, elapsed: 2.017 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.434, system: 0.071, elapsed: 11.101 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.014, elapsed: 0.228 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.203, system: 0.408, elapsed: 6.620 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.228 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.195, system: 0.550, elapsed: 20.848 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.569, system: 0.033, elapsed: 2.066 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.687, system: 0.085, elapsed: 13.064 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.013, elapsed: 0.290 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.285, system: 0.407, elapsed: 6.197 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.204 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.143, system: 0.242, elapsed: 0.946 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.710, system: 0.807, elapsed: 23.586 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.606, system: 0.038, elapsed: 2.161 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.558, system: 0.062, elapsed: 11.913 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.015, elapsed: 0.316 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.248, system: 0.411, elapsed: 7.405 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.006, elapsed: 0.309 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.704, system: 0.560, elapsed: 26.581 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.168, system: 1.120, elapsed: 49.696 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64