Last updated on 2025-09-13 13:50:24 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| basket | 13 | |
| listdown | 5 | 8 |
| preference | 13 |
Current CRAN status: NOTE: 13
Version: 0.10.11
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.10.11
Check: Rd files
Result: NOTE
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 5, NOTE: 8
Version: 0.5.7
Check: Rd files
Result: NOTE
checkRd: (-1) ld_build_html_site.Rd:41: Lost braces
41 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
| ^
checkRd: (-1) ld_create_doc.Rd:29: Lost braces
29 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.5.7
Check: examples
Result: ERROR
Running examples in ‘listdown-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: as_ld_yml
> ### Title: Turn a Computational Component List into YAML with Class
> ### Information
> ### Aliases: as_ld_yml
>
> ### ** Examples
>
> if (require("ggplot2")) {
+
+ cc_list <- list(
+ Linear = ggplot(anscombe, aes(x = x1, y = y1)) + geom_point(),
+ `Non Linear` = ggplot(anscombe, aes(x = x2, y = y2)) + geom_point(),
+ `Outlier Vertical`= ggplot(anscombe, aes(x = x3, y = y3)) + geom_point(),
+ `Outlier Horizontal` = ggplot(anscombe, aes(x = x4, y = y4)) +
+ geom_point())
+
+ as_ld_yml(cc_list)
+ }
Loading required package: ggplot2
Error in parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)), :
<text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Calls: as_ld_yml -> depth_first_copy -> eval -> parse
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5.7
Check: tests
Result: ERROR
Running ‘testthat.r’ [23s/28s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-create-doc.r:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),
", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Backtrace:
▆
1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─listdown::as_ld_yml(cc_list)
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.7
Check: tests
Result: ERROR
Running ‘testthat.r’ [16s/20s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-create-doc.r:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),
", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Backtrace:
▆
1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─listdown::as_ld_yml(cc_list)
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.7
Check: examples
Result: ERROR
Running examples in ‘listdown-Ex.R’ failed
The error most likely occurred in:
> ### Name: as_ld_yml
> ### Title: Turn a Computational Component List into YAML with Class
> ### Information
> ### Aliases: as_ld_yml
>
> ### ** Examples
>
> if (require("ggplot2")) {
+
+ cc_list <- list(
+ Linear = ggplot(anscombe, aes(x = x1, y = y1)) + geom_point(),
+ `Non Linear` = ggplot(anscombe, aes(x = x2, y = y2)) + geom_point(),
+ `Outlier Vertical`= ggplot(anscombe, aes(x = x3, y = y3)) + geom_point(),
+ `Outlier Horizontal` = ggplot(anscombe, aes(x = x4, y = y4)) +
+ geom_point())
+
+ as_ld_yml(cc_list)
+ }
Loading required package: ggplot2
Error in parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)), :
<text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Calls: as_ld_yml -> depth_first_copy -> eval -> parse
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 0.5.7
Check: tests
Result: ERROR
Running ‘testthat.r’ [35s/47s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-create-doc.r:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),
", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Backtrace:
▆
1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─listdown::as_ld_yml(cc_list)
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.7
Check: tests
Result: ERROR
Running ‘testthat.r’ [34s/45s]
Running the tests in ‘tests/testthat.r’ failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[WARNING] Deprecated: --no-highlight. Use --syntax-highlighting=none instead.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-create-doc.r:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),
", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Backtrace:
▆
1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─listdown::as_ld_yml(cc_list)
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.7
Check: tests
Result: ERROR
Running 'testthat.r' [28s]
Running the tests in 'tests/testthat.r' failed.
Complete output:
> library(testthat)
> library(listdown)
>
> test_check("listdown")
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-create-doc.r:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-as-yml.r:20:3'): Writing a yml file works. ─────────────────────
Error in `parse(text = paste("x", loc, " <<- list(paste(", deparse(class(elem)),
", collapse = \":\"))"))`: <text>:2:1: unexpected symbol
1: x [[1]] <<- list(paste( c("ggplot2::ggplot", "ggplot", "ggplot2::gg", "S7_object", "gg" , collapse = ":"))
2: x
^
Backtrace:
▆
1. ├─testthat::expect_equal(as_ld_yml(cc_list), read_reference("as-yml.rds")) at test-as-yml.r:20:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─listdown::as_ld_yml(cc_list)
5. └─listdown (local) depth_first_copy()
6. ├─base::eval(...)
7. └─base::parse(...)
── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ────────────────────────
ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds").
4 string mismatches
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 1.1.6
Check: Rd files
Result: NOTE
checkRd: (-1) preference-package.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:68-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:26-27: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64