Last updated on 2026-02-18 12:52:48 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 14 | ||
| mlr | 2 | 12 | |
| mlr3pipelines | 4 | 10 | |
| paradox | 14 | ||
| ParamHelpers | 14 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 4, OK: 10
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [791s/537s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-15 20:09:27.157009: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.158375: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.183794: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.25293: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:27.475621: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.476362: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.494338: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.54134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:27.614079: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.617664: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.659377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:27.777817: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:27.781972: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:27.838899: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:27.845135: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:27.897204: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:28.076971: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:28.086181: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:28.603579: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:28.606632: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:28.629782: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:28.778972: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:28.84653: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:28.847647: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:28.887647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.198638: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:29.206905: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:29.521156: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:29.524116: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:29.537754: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.586107: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:29.656576: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:29.6576: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:29.729016: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:29.849902: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:29.854035: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:30.282384: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.283112: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.306534: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.350484: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:30.451696: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.452746: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.47979: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.611242: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:30.617045: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:30.881019: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:30.881775: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:30.897715: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:30.928355: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:31.060118: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.063322: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.108732: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:31.275105: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:31.276793: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:31.600912: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.601784: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.627943: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:31.749531: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:31.930834: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:31.931934: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:31.961065: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.093388: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:32.099282: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:32.400098: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:32.400879: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:32.426651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.489785: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:32.67797: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-15 20:09:32.679081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:32.727043: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:32.858254: embedding
> test_pipeop_isomap.R: 2026-02-15 20:09:32.860047: DONE
> test_pipeop_isomap.R: 2026-02-15 20:09:33.243982: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.24469: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.271802: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.326511: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:33.629313: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.636544: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.656802: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.729207: Classical Scaling
> test_pipeop_isomap.R: 2026-02-15 20:09:33.84841: Isomap START
> test_pipeop_isomap.R: 2026-02-15 20:09:33.855574: constructing knn graph
> test_pipeop_isomap.R: 2026-02-15 20:09:33.877427: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-15 20:09:33.940153: Classical Scaling
Saving _problems/test_pipeop_learnercv-127.R
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_colroles.R:6:3', 'test_pipeop_copy.R:5:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_pipeop_learnercv.R:124:3'): PipeOpLearnerCV - cv ensemble averages fold learners ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('4 string mismatches')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(as.character(result_response), task$class_names[max.col(manual_prob)]) at test_pipeop_learnercv.R:124:3
2. └─testthat::expect_true(...)
[ FAIL 1 | WARN 0 | SKIP 100 | PASS 13056 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-18 23:01:50.610427: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.610712: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.613932: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.620145: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:50.634092: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.634229: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.63667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.642595: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:50.649712: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.649891: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.654588: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.669619: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:50.67005: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:50.67609: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.676232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.680635: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.695696: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:50.69615: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:50.71611: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.716253: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.720631: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.753715: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:50.763067: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.763243: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.771159: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.848551: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:50.849814: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:50.884479: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.884641: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.887196: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.893434: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:50.901564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.901757: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.913679: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.928998: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:50.929544: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:50.960991: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.961121: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.963177: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.968768: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:50.978881: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:50.979025: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:50.983252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:50.997388: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:50.997775: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:51.015949: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.016075: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.01831: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.024382: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:51.035268: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.035452: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.039961: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.054082: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:51.054449: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:51.072409: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.072515: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.074674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.080811: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:51.093224: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.093524: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.097942: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.110699: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:51.110997: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:51.129704: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.129842: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.132192: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.138249: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:51.149376: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.149549: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.153997: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.168663: embedding
> test_pipeop_isomap.R: 2026-02-18 23:01:51.169016: DONE
> test_pipeop_isomap.R: 2026-02-18 23:01:51.190189: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.19032: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.199887: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.206393: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:51.226648: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.226767: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.229005: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.23535: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 23:01:51.24107: Isomap START
> test_pipeop_isomap.R: 2026-02-18 23:01:51.241209: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 23:01:51.243612: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 23:01:51.24984: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [424s/554s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 12:42:03.448789: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.44991: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.51292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.554752: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685279: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685995: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.700435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.749001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.792524: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.793396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.86142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.974069: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:03.977724: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.056452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.057232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.082463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.182457: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:04.18392: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.383877: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.384168: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.410482: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.59234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:04.63203: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.632532: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.694128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.319163: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.324606: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:05.652853: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.653286: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.663621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.706464: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:05.735485: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.736029: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.768998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.845539: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.847664: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.156447: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.157106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.168529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.203423: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.28129: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.282232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.317968: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.413315: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:06.420353: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640564: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640883: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.68676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.73773: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.867146: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.868756: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.933461: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.017234: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.020134: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.169741: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.170125: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.200641: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.233351: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388062: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388522: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.405289: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.499942: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.501318: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.637899: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.639234: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.651689: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.698978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940215: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940981: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.083141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.161899: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:08.16393: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:08.402617: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.403039: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.460106: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.502159: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.682978: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.683359: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.69142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.737656: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.763833: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.764318: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.7725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.84466: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [285s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 19:51:20.881545: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:20.882264: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:20.891978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:20.913192: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:21.001008: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:21.001735: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:21.012534: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:21.033153: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:21.078806: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:21.079741: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:21.102317: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:21.153075: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:21.154989: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:21.197339: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:21.198003: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:21.219116: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:21.269614: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:21.271433: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:21.391474: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:21.39194: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:21.413283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:21.546256: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:21.613281: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:21.61434: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:21.65401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:21.892341: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:21.89922: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:22.15306: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.153746: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.165848: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.189267: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:22.244495: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.24543: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.360726: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.40486: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:22.406515: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:22.56505: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.565487: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.572484: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.587562: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:22.642875: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.64379: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.667079: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.718446: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:22.72028: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:22.824773: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.825212: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.832433: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.848236: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:22.910926: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:22.911802: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:22.932616: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:22.971214: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:22.972556: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:23.091897: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.092333: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.104022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.123369: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:23.199109: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.200037: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.222693: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.271168: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:23.273075: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:23.39945: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.400165: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.409621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.427482: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:23.491385: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.492359: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.515822: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.566306: embedding
> test_pipeop_isomap.R: 2026-02-16 19:51:23.568294: DONE
> test_pipeop_isomap.R: 2026-02-16 19:51:23.748801: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.749451: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.760073: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.78241: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:23.910377: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.910866: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.921389: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:23.94151: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 19:51:23.979444: Isomap START
> test_pipeop_isomap.R: 2026-02-16 19:51:23.980173: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 19:51:23.99306: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 19:51:24.013748: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14