Last updated on 2025-12-20 13:50:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | 13.21 | 81.72 | 94.93 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 7.69 | 55.61 | 63.30 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 23.00 | 131.09 | 154.09 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 20.00 | 161.60 | 181.60 | OK | |
| r-devel-windows-x86_64 | 0.9.1 | 13.00 | 114.00 | 127.00 | OK | |
| r-patched-linux-x86_64 | 0.9.1 | 13.59 | 101.38 | 114.97 | OK | |
| r-release-linux-x86_64 | 0.9.1 | 12.29 | 104.29 | 116.58 | OK | |
| r-release-macos-arm64 | 0.9.1 | OK | ||||
| r-release-macos-x86_64 | 0.9.1 | 10.00 | 113.00 | 123.00 | OK | |
| r-release-windows-x86_64 | 0.9.1 | 15.00 | 112.00 | 127.00 | OK | |
| r-oldrel-macos-arm64 | 0.9.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.9.1 | 11.00 | 125.00 | 136.00 | OK | |
| r-oldrel-windows-x86_64 | 0.9.1 | 20.00 | 139.00 | 159.00 | OK |
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘msSPChelpR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: renumber_time_id_tt
> ### Title: Renumber the time ID per case (i.e. Tumor sequence) - tidytable
> ### version
> ### Aliases: renumber_time_id_tt
>
> ### ** Examples
>
>
> data(us_second_cancer)
> us_second_cancer %>%
+ #only select first 10000 rows so example runs faster
+ dplyr::slice(1:10000) %>%
+ msSPChelpR::renumber_time_id_tt(new_time_id_var = "t_tumid",
+ dattype = "seer",
+ case_id_var = "fake_id")
Error in `[.data.table`(~.df, , `:=`(t_tumid = as.integer(seq_len(.N))), :
attempt access index 16/16 in VECTOR_ELT
Calls: %>% ... <Anonymous> -> mutate.tidytable -> eval_tidy -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:236-258 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 11/11 in VECTOR_ELT
---
Backtrace:
▆
1. ├─usdata_wide %>% ...
2. ├─msSPChelpR::sir_byfutime(...)
3. │ └─... %>% tidytable::filter(n > 1)
4. ├─tidytable::filter(., n > 1)
5. ├─tidytable::add_count(...)
6. ├─tidytable:::add_count.tidytable(...)
7. │ ├─tidytable::mutate(.df, `:=`(!!name, n()), .by = c(!!!.by))
8. │ └─tidytable:::mutate.tidytable(.df, `:=`(!!name, n()), .by = c(!!!.by))
9. │ └─rlang::eval_tidy(dt_expr, .df, dt_env)
10. ├─.df[, `:=`(n = .N), by = `<chr>`, keyby = FALSE]
11. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
attempt access index 11/11 in VECTOR_ELT
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in ‘msSPChelpR-Ex.R’ failed
The error most likely occurred in:
> ### Name: renumber_time_id_tt
> ### Title: Renumber the time ID per case (i.e. Tumor sequence) - tidytable
> ### version
> ### Aliases: renumber_time_id_tt
>
> ### ** Examples
>
>
> data(us_second_cancer)
> us_second_cancer %>%
+ #only select first 10000 rows so example runs faster
+ dplyr::slice(1:10000) %>%
+ msSPChelpR::renumber_time_id_tt(new_time_id_var = "t_tumid",
+ dattype = "seer",
+ case_id_var = "fake_id")
Error in `[.data.table`(~.df, , `:=`(t_tumid = as.integer(seq_len(.N))), :
attempt access index 16/16 in VECTOR_ELT
Calls: %>% ... <Anonymous> -> mutate.tidytable -> eval_tidy -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:236-258 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 11/11 in VECTOR_ELT
---
Backtrace:
▆
1. ├─usdata_wide %>% ...
2. ├─msSPChelpR::sir_byfutime(...)
3. │ └─... %>% tidytable::filter(n > 1)
4. ├─tidytable::filter(., n > 1)
5. ├─tidytable::add_count(...)
6. ├─tidytable:::add_count.tidytable(...)
7. │ ├─tidytable::mutate(.df, `:=`(!!name, n()), .by = c(!!!.by))
8. │ └─tidytable:::mutate.tidytable(.df, `:=`(!!name, n()), .by = c(!!!.by))
9. │ └─rlang::eval_tidy(dt_expr, .df, dt_env)
10. ├─.df[, `:=`(n = .N), by = `<chr>`, keyby = FALSE]
11. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
attempt access index 11/11 in VECTOR_ELT
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang