Last updated on 2025-09-13 00:50:55 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 6.23 | 53.97 | 60.20 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 4.13 | 38.66 | 42.79 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 94.21 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 81.05 | OK | |||
| r-devel-windows-x86_64 | 2.0.0 | 8.00 | 68.00 | 76.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 5.74 | 48.04 | 53.78 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 6.10 | 48.04 | 54.14 | OK | |
| r-release-macos-arm64 | 2.0.0 | 31.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 63.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 7.00 | 68.00 | 75.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 30.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 62.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 12.00 | 88.00 | 100.00 | ERROR |
Version: 2.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Sending GraphQL request...
x Sending GraphQL request... [5s]
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test_GWASColocQuery.R:2:3', 'test_adverseEventsQuery.R:2:3',
'test_chemblQuery.R:2:3', 'test_clinVarQuery.R:2:3',
'test_compGenomicsQuery.R:2:3', 'test_depMapQuery.R:2:3',
'test_europePMCQuery.R:2:3', 'test_geneBurdenQuery.R:2:3',
'test_geneOntologyQuery.R:2:3', 'test_geneticConstraintQuery.R:2:3',
'test_genomicsEnglandQuery.R:2:3', 'test_hallmarksQuery.R:2:3',
'test_interactionsQuery.R:2:3', 'test_knownDrugsChemblQuery.R:2:3',
'test_knownDrugsGeneQuery.R:2:3', 'test_mechanismsOfActionQuery.R:2:3',
'test_mousePhenotypesQuery.R:2:3', 'test_orphanetQuery.R:2:3',
'test_pathwaysQuery.R:2:3', 'test_pharmacogenomicsChemblQuery.R:2:3',
'test_pharmacogenomicsGeneQuery.R:2:3',
'test_pharmacogenomicsVariantQuery.R:2:3', 'test_qtlCredibleSetsQuery.R:2:3',
'test_safetyQuery.R:2:3', 'test_sharedTraitStudiesQuery.R:2:3',
'test_uniProtVariantsQuery.R:2:3', 'test_uniprotLiteratureQuery.R:2:3',
'test_variantEffectPredictorQuery.R:2:3', 'test_variantEffectQuery.R:2:3',
'test_variantsQuery.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gwasCredibleSetsQuery.R:10:3'): gwasCredibleSetsQuery returns expected results ──
Error in `gwasCredibleSetsQuery(ensemblId = ensemblId, efoId = efoId, size = size)`: GraphQL query failed. HTTP status: 502
Backtrace:
▆
1. └─otargen::gwasCredibleSetsQuery(...) at test_gwasCredibleSetsQuery.R:10:3
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64