Last updated on 2025-10-31 13:51:31 CET.
| Package | NOTE | OK |
|---|---|---|
| BIGDAWG | 4 | 9 |
| HLAtools | 13 | |
| pould | 13 |
Current CRAN status: NOTE: 4, OK: 9
Version: 3.0.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Derek",
family = "Pappas",
role = "aut",
email = "djpappas75@gmail.com"),
person(given = "Steve",
family = "Mack",
role = c("aut", "cre"),
email = "Steven.Mack@ucsf.edu"),
person(given = "Jill",
family = "Hollenbach",
role = "aut",
email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.0.3
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘httr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64