Last updated on 2026-06-08 13:50:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 243.11 | 284.31 | 527.42 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 243.41 | 206.96 | 450.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 269.00 | 433.74 | 702.74 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 600.00 | 463.51 | 1063.51 | NOTE | |
| r-devel-windows-x86_64 | 0.3.0 | 276.00 | 334.00 | 610.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 245.24 | 279.15 | 524.39 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 244.40 | 282.59 | 526.99 | OK | |
| r-release-macos-arm64 | 0.3.0 | 52.00 | 39.00 | 91.00 | OK | |
| r-release-macos-x86_64 | 0.3.0 | 163.00 | 268.00 | 431.00 | OK | |
| r-release-windows-x86_64 | 0.3.0 | 277.00 | 349.00 | 626.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.0 | 155.00 | 180.00 | 335.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.0 | 364.00 | 435.00 | 799.00 | OK |
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("surveil")
Loading required package: surveil
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.006 seconds (Warm-up)
Chain 1: 0.005 seconds (Sampling)
Chain 1: 0.011 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.006 seconds (Warm-up)
Chain 1: 0.012 seconds (Sampling)
Chain 1: 0.018 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
[1] "\nSetting LKJ prior on correlation matrix: "
eta
2
SAMPLING FOR MODEL 'RWCorr' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 7.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.79 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.023 seconds (Warm-up)
Chain 1: 0.363 seconds (Sampling)
Chain 1: 0.386 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
[1] "\nSetting LKJ prior on correlation matrix: "
eta
2
SAMPLING FOR MODEL 'RWCorr' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.67 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.081 seconds (Warm-up)
Chain 1: 1.338 seconds (Sampling)
Chain 1: 1.419 seconds (Total)
Chain 1:
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.006 seconds (Warm-up)
Chain 1: 0.004 seconds (Sampling)
Chain 1: 0.01 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'RWCorr' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.016 seconds (Warm-up)
Chain 1: 0.037 seconds (Sampling)
Chain 1: 0.053 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.03 seconds (Warm-up)
Chain 1: 0.047 seconds (Sampling)
Chain 1: 0.077 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Saving _problems/test_rw-109.R
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.025 seconds (Warm-up)
Chain 1: 0.049 seconds (Sampling)
Chain 1: 0.074 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.04 seconds (Warm-up)
Chain 1: 0.049 seconds (Sampling)
Chain 1: 0.089 seconds (Total)
Chain 1:
[1] "Setting normal prior(s) for eta_1: "
location scale
-6 5
[1] "\nSetting half-normal prior for sigma: "
location scale
0 1
SAMPLING FOR MODEL 'RW' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000164 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.64 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.306 seconds (Warm-up)
Chain 1: 2.364 seconds (Sampling)
Chain 1: 2.67 seconds (Total)
Chain 1:
[ FAIL 1 | WARN 44 | SKIP 0 | PASS 10 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_rw.R:102:5'): group_diff works, family = binomial ──────────────
Error in `file(messages, open = "wt")`: cannot open the connection
Backtrace:
▆
1. └─surveil::stan_rw(...) at test_rw.R:102:5
2. ├─rstan::sampling(...)
3. └─rstan::sampling(...)
4. └─rstan (local) .local(object, ...)
5. └─base::file(messages, open = "wt")
[ FAIL 1 | WARN 44 | SKIP 0 | PASS 10 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘RcppParallel’ ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc