Last updated on 2025-09-13 00:51:29 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| hmde | 4 | 3 | 6 |
Current CRAN status: ERROR: 4, NOTE: 3, OK: 6
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.001173 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.73 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 2.682 seconds (Warm-up)
Chain 1: 1.732 seconds (Sampling)
Chain 1: 4.414 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.001379 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 13.79 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.365 seconds (Warm-up)
Chain 2: 0.064 seconds (Sampling)
Chain 2: 0.429 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.13 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.312 seconds (Warm-up)
Chain 1: 0.861 seconds (Sampling)
Chain 1: 1.173 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0.005 seconds (Sampling)
Chain 1: 0.006 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.2e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.12 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.005 seconds (Warm-up)
Chain 2: 0.006 seconds (Sampling)
Chain 2: 0.011 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.657 seconds (Warm-up)
Chain 1: 1.528 seconds (Sampling)
Chain 1: 2.185 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.003333 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 33.33 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.011 seconds (Warm-up)
Chain 1: 0.014 seconds (Sampling)
Chain 1: 0.025 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.003671 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 36.71 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.011 seconds (Warm-up)
Chain 2: 0.021 seconds (Sampling)
Chain 2: 0.032 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.63 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.177 seconds (Warm-up)
Chain 1: 0.04 seconds (Sampling)
Chain 1: 0.217 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.5 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.135 seconds (Warm-up)
Chain 1: 0.074 seconds (Sampling)
Chain 1: 0.209 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000916 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.16 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.265 seconds (Warm-up)
Chain 1: 0.856 seconds (Sampling)
Chain 1: 1.121 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000856 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 8.56 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.208 seconds (Warm-up)
Chain 2: 0.183 seconds (Sampling)
Chain 2: 0.391 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.158 seconds (Warm-up)
Chain 1: 0.205 seconds (Sampling)
Chain 1: 0.363 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1: 0.003 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 8e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.08 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2: 0.002 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.556 seconds (Warm-up)
Chain 1: 0.918 seconds (Sampling)
Chain 1: 1.474 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.51 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0.04 seconds (Sampling)
Chain 1: 0.042 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.003 seconds (Warm-up)
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Chain 2: 0.007 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.42 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.036 seconds (Warm-up)
Chain 1: 0.06 seconds (Sampling)
Chain 1: 0.096 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.56 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.141 seconds (Warm-up)
Chain 1: 0.088 seconds (Sampling)
Chain 1: 0.229 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.002 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002085 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 20.85 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.478 seconds (Warm-up)
Chain 1: 13.769 seconds (Sampling)
Chain 1: 14.247 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002135 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 21.35 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.595 seconds (Warm-up)
Chain 2: 0.743 seconds (Sampling)
Chain 2: 1.338 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1: Elapsed Time: 0.776 seconds (Warm-up)
Chain 1: 1.634 seconds (Sampling)
Chain 1: 2.41 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.004097 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 40.97 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1: 0.022 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: Elapsed Time: 0.006 seconds (Warm-up)
Chain 2: 0.03 seconds (Sampling)
Chain 2: 0.036 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 1.803 seconds (Warm-up)
Chain 1: 2.8 seconds (Sampling)
Chain 1: 4.603 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.99 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1: Elapsed Time: 0.04 seconds (Warm-up)
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Chain 1: 0.053 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 6.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: 0.014 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.95 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1: Elapsed Time: 0.193 seconds (Warm-up)
Chain 1: 0.162 seconds (Sampling)
Chain 1: 0.355 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.65 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.167 seconds (Warm-up)
Chain 1: 0.248 seconds (Sampling)
Chain 1: 0.415 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.001 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002338 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 23.38 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.534 seconds (Warm-up)
Chain 1: 0.147 seconds (Sampling)
Chain 1: 0.681 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002136 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 21.36 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 3.1e-05 seconds
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Chain 1:
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
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[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 113.0Mb
sub-directories of 1Mb or more:
article 3.0Mb
doc 1.1Mb
libs 108.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64