Last updated on 2025-09-13 00:51:31 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| TransProR | 3 | 1 | 9 |
Current CRAN status: ERROR: 3, NOTE: 1, OK: 9
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘TransProR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: highlight_by_node
> ### Title: Highlight Nodes in a Phylogenetic Tree with Custom Fill Colors
> ### and Transparency
> ### Aliases: highlight_by_node
>
> ### ** Examples
>
> plot_file <- system.file("extdata", "tree_plot.rds", package = "TransProR")
> p2_plot <- readRDS(plot_file)
>
> # Please replace the following vectors with your specific values
> nodes <- c(117, 129, 125, 127, 119,
+ 123, 139, 166, 124, 131, 217) # x-values of the nodes you want to highlight
> fill_colors <- c("#CD6600", "#CD6600", "#CD6600",
+ "#CD6600", "#009933", "#009933",
+ "#009933", "#009933", "#9B30FF",
+ "#9B30FF", "#9B30FF") # Fill colors
> alpha_values <- c(0.3, 0.3, 0.3, 0.3, 0.2, 0.3,
+ 0.3, 0.3, 0.3, 0.3, 0.3) # Transparency values
> extend_values <- c(25, 24, 24, 25, 25, 25,
+ 24, 24, 25, 24, 24) # Values for the 'extend' parameter
>
> p2 <- highlight_by_node(
+ p2_plot,
+ nodes,
+ fill_colors,
+ alpha_values,
+ extend_values
+ )
Error in ggtree_object + layer : non-numeric argument to binary operator
Calls: highlight_by_node
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DESeq2_analyze 7.772 0.263 9.156
enrich_polar_bubble 4.351 0.119 6.110
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘TransProR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: highlight_by_node
> ### Title: Highlight Nodes in a Phylogenetic Tree with Custom Fill Colors
> ### and Transparency
> ### Aliases: highlight_by_node
>
> ### ** Examples
>
> plot_file <- system.file("extdata", "tree_plot.rds", package = "TransProR")
> p2_plot <- readRDS(plot_file)
>
> # Please replace the following vectors with your specific values
> nodes <- c(117, 129, 125, 127, 119,
+ 123, 139, 166, 124, 131, 217) # x-values of the nodes you want to highlight
> fill_colors <- c("#CD6600", "#CD6600", "#CD6600",
+ "#CD6600", "#009933", "#009933",
+ "#009933", "#009933", "#9B30FF",
+ "#9B30FF", "#9B30FF") # Fill colors
> alpha_values <- c(0.3, 0.3, 0.3, 0.3, 0.2, 0.3,
+ 0.3, 0.3, 0.3, 0.3, 0.3) # Transparency values
> extend_values <- c(25, 24, 24, 25, 25, 25,
+ 24, 24, 25, 24, 24) # Values for the 'extend' parameter
>
> p2 <- highlight_by_node(
+ p2_plot,
+ nodes,
+ fill_colors,
+ alpha_values,
+ extend_values
+ )
Error in ggtree_object + layer : non-numeric argument to binary operator
Calls: highlight_by_node
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DESeq2_analyze 5.617 0.101 7.25
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘TransProR-Ex.R’ failed
The error most likely occurred in:
> ### Name: highlight_by_node
> ### Title: Highlight Nodes in a Phylogenetic Tree with Custom Fill Colors
> ### and Transparency
> ### Aliases: highlight_by_node
>
> ### ** Examples
>
> plot_file <- system.file("extdata", "tree_plot.rds", package = "TransProR")
> p2_plot <- readRDS(plot_file)
>
> # Please replace the following vectors with your specific values
> nodes <- c(117, 129, 125, 127, 119,
+ 123, 139, 166, 124, 131, 217) # x-values of the nodes you want to highlight
> fill_colors <- c("#CD6600", "#CD6600", "#CD6600",
+ "#CD6600", "#009933", "#009933",
+ "#009933", "#009933", "#9B30FF",
+ "#9B30FF", "#9B30FF") # Fill colors
> alpha_values <- c(0.3, 0.3, 0.3, 0.3, 0.2, 0.3,
+ 0.3, 0.3, 0.3, 0.3, 0.3) # Transparency values
> extend_values <- c(25, 24, 24, 25, 25, 25,
+ 24, 24, 25, 24, 24) # Values for the 'extend' parameter
>
> p2 <- highlight_by_node(
+ p2_plot,
+ nodes,
+ fill_colors,
+ alpha_values,
+ extend_values
+ )
Error in ggtree_object + layer : non-numeric argument to binary operator
Calls: highlight_by_node
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ggtreeExtra’
Flavor: r-oldrel-macos-x86_64