CRAN Package Check Results for Maintainer Zachary Foster <zacharyfoster1989 at gmail.com>

CRAN Package Check Results for Maintainer ‘Zachary Foster <zacharyfoster1989 at gmail.com>’

Last updated on 2025-09-13 00:51:31 CEST.

Package	ERROR	NOTE	OK
metacoder	5		8
taxa			13
taxize		1	12

Package metacoder

Current CRAN status: ERROR: 5, OK: 8

Version: 0.3.8
Check: tests
Result: ERROR Running ‘testthat.R’ [41s/54s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > suppressPackageStartupMessages(library(metacoder)) > > test_check("metacoder") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test--parsers_and_writers.R:104:3', 'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3', 'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test--calculations.R:153:3'): Comparing groups of samples ───────── `... <- NULL` did not produce any warnings. [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.8
Check: tests
Result: ERROR Running ‘testthat.R’ [23s/26s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > suppressPackageStartupMessages(library(metacoder)) > > test_check("metacoder") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test--parsers_and_writers.R:104:3', 'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3', 'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test--calculations.R:153:3'): Comparing groups of samples ───────── `... <- NULL` did not produce any warnings. [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3.8
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘R6’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.8
Check: tests
Result: ERROR Running ‘testthat.R’ [66s/70s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > suppressPackageStartupMessages(library(metacoder)) > > test_check("metacoder") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test--parsers_and_writers.R:104:3', 'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3', 'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test--calculations.R:153:3'): Comparing groups of samples ───────── `... <- NULL` did not produce any warnings. [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.8
Check: tests
Result: ERROR Running ‘testthat.R’ [61s/73s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > > suppressPackageStartupMessages(library(metacoder)) > > test_check("metacoder") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test--parsers_and_writers.R:104:3', 'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3', 'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test--calculations.R:153:3'): Comparing groups of samples ───────── `... <- NULL` did not produce any warnings. [ FAIL 1 | WARN 0 | SKIP 5 | PASS 531 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.3.8
Check: tests
Result: ERROR Running 'testthat.R' [32s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > > suppressPackageStartupMessages(library(metacoder)) > > test_check("metacoder") [ FAIL 1 | WARN 1 | SKIP 5 | PASS 531 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (5): 'test--parsers_and_writers.R:104:3', 'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3', 'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test--calculations.R:153:3'): Comparing groups of samples ───────── `... <- NULL` did not produce any warnings. [ FAIL 1 | WARN 1 | SKIP 5 | PASS 531 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Package taxa

Current CRAN status: OK: 13

Package taxize

Current CRAN status: NOTE: 1, OK: 12

Version: 0.10.0
Check: R code for possible problems
Result: NOTE Found the following possibly unsafe calls: Fatal error: cannot create 'R_TempDir' Fatal error: cannot create 'R_TempDir' Flavor: r-oldrel-macos-arm64