MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.

Version:	1.3.2
Depends:	ape, phytools
Imports:	phangorn, RColorBrewer
Suggests:	knitr, testthat, paleotree, rmarkdown, taxize
Published:	2024-10-17
DOI:	10.32614/CRAN.package.MonoPhy
Author:	Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb]
Maintainer:	Orlando Schwery <schwery.macroevo at pm.me>
License:	GPL-3
NeedsCompilation:	no
Citation:	MonoPhy citation info
CRAN checks:	MonoPhy results

Documentation:

Reference manual:	MonoPhy.html , MonoPhy.pdf
Vignettes:	MonoPhy Tutorial (source, R code)

Downloads:

Package source:	MonoPhy_1.3.2.tar.gz
Windows binaries:	r-devel: MonoPhy_1.3.2.zip, r-release: MonoPhy_1.3.2.zip, r-oldrel: MonoPhy_1.3.2.zip
macOS binaries:	r-release (arm64): MonoPhy_1.3.2.tgz, r-oldrel (arm64): MonoPhy_1.3.2.tgz, r-release (x86_64): MonoPhy_1.3.2.tgz, r-oldrel (x86_64): MonoPhy_1.3.2.tgz
Old sources:	MonoPhy archive

Linking:

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