To automated functional annotation of genetic variants and linked proxies. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.
| Version: | 1.4.3 |
| Depends: | R (≥ 4.0) |
| Imports: | data.table (≥ 1.15.4), httr (≥ 1.4.7), jsonlite (≥ 1.8.8), xml2 (≥ 1.3.6), openxlsx (≥ 4.2.5.2), progress (≥ 1.2.3), ggplot2 (≥ 3.5.1), kableExtra (≥ 1.4.0), methods (≥ 4.2.0), rmarkdown (≥ 2.26), ini (≥ 0.3.1), igraph (≥ 2.0.3), ggraph (≥ 2.2.1), futile.logger (≥ 1.4.3), png , readr (≥ 2.1.5) |
| Suggests: | knitr |
| Published: | 2025-11-26 |
| DOI: | 10.32614/CRAN.package.SNPannotator |
| Author: | Alireza Ani [aut, cre], Zoha Kamali [aut], Ahmad Vaez [aut] |
| Maintainer: | Alireza Ani <a.ani at umcg.nl> |
| License: | GPL-3 |
| URL: | https://cran.r-project.org/package=SNPannotator |
| NeedsCompilation: | no |
| CRAN checks: | SNPannotator results |
| Reference manual: | SNPannotator.html , SNPannotator.pdf |
| Vignettes: |
Introduction to SNPannotator package (source, R code) |
| Package source: | SNPannotator_1.4.3.tar.gz |
| Windows binaries: | r-devel: SNPannotator_0.2.6.0.zip, r-release: SNPannotator_0.2.6.0.zip, r-oldrel: SNPannotator_1.4.0.zip |
| macOS binaries: | r-release (arm64): SNPannotator_1.4.3.tgz, r-oldrel (arm64): SNPannotator_1.4.3.tgz, r-release (x86_64): SNPannotator_1.4.3.tgz, r-oldrel (x86_64): SNPannotator_1.4.3.tgz |
| Old sources: | SNPannotator archive |
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