falcon: Finding Allele-Specific Copy Number in Next-Generation
Sequencing Data
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
| Version: |
0.2 |
| Depends: |
R (≥ 3.0.1) |
| Published: |
2016-04-21 |
| DOI: |
10.32614/CRAN.package.falcon |
| Author: |
Hao Chen and Nancy R. Zhang |
| Maintainer: |
Hao Chen <hxchen at ucdavis.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| CRAN checks: |
falcon results |
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