Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
| Version: |
2.1.11 |
| Depends: |
ape, deSolve, GenSA, subplex, nloptr |
| Imports: |
parallel, phytools, data.table, igraph, methods, diversitree, paleotree, plotrix, geiger, phangorn, TreeSim, corHMM |
| Suggests: |
testthat, knitr, rmarkdown, markdown |
| Published: |
2023-02-11 |
| DOI: |
10.32614/CRAN.package.hisse |
| Author: |
Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut],
James Boyko [aut],
Thais Vasconcelos [aut] |
| Maintainer: |
Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| Citation: |
hisse citation info |
| In views: |
Phylogenetics |
| CRAN checks: |
hisse results |