analyse_functional_network	analyse_functional_network
anova_protti	anova_protti
assign_missingness	assign_missingness
assign_peptide_type	assign_peptide_type
barcode_plot	barcode_plot
calculate_aa_scores	calculate_aa_scores
calculate_diff_abundance	calculate_diff_abundance
calculate_go_enrichment	calculate_go_enrichment
calculate_imputation	calculate_imputation
calculate_kegg_enrichment	calculate_kegg_enrichment
calculate_protein_abundance	calculate_protein_abundance
calculate_sequence_coverage	calculate_sequence_coverage
calculate_treatment_enrichment	calculate_treatment_enrichment
correct_lip_for_abundance	correct_lip_for_abundance
create_queue	create_queue
create_structure_contact_map	create_structure_contact_map
create_synthetic_data	create_synthetic_data
diff_abundance	diff_abundance
drc_4p	drc_4p
drc_4p_plot	drc_4p_plot
extract_metal_binders	extract_metal_binders
fetch_alphafold_aligned_error	fetch_alphafold_aligned_error
fetch_alphafold_prediction	fetch_alphafold_prediction
fetch_chebi	fetch_chebi
fetch_eco	fetch_eco
fetch_go	fetch_go
fetch_kegg	fetch_kegg
fetch_metal_pdb	fetch_metal_pdb
fetch_mobidb	fetch_mobidb
fetch_pdb	fetch_pdb
fetch_pdb_structure	fetch_pdb_structure
fetch_quickgo	fetch_quickgo
fetch_uniprot	fetch_uniprot
fetch_uniprot_proteome	fetch_uniprot_proteome
filter_cv	filter_cv
find_all_subs	find_all_subs
find_chebis	find_chebis
find_peptide	find_peptide
find_peptide_in_structure	find_peptide_in_structure
fit_drc_4p	fit_drc_4p
go_enrichment	go_enrichment
impute	impute
kegg_enrichment	kegg_enrichment
mako_colours	mako_colours
map_peptides_on_structure	map_peptides_on_structure
median_normalisation	median_normalisation
metal_chebi_uniprot	metal_chebi_uniprot
metal_go_slim_subset	metal_go_slim_subset
metal_list	metal_list
network_analysis	network_analysis
normalise	normalise
parallel_create_structure_contact_map	parallel_create_structure_contact_map
parallel_fit_drc_4p	parallel_fit_drc_4p
peptide_profile_plot	peptide_profile_plot
peptide_type	peptide_type
plot_drc_4p	plot_drc_4p
plot_peptide_profiles	plot_peptide_profiles
plot_pval_distribution	plot_pval_distribution
predict_alphafold_domain	predict_alphafold_domain
protti_colours	protti_colours
ptsi_pgk	ptsi_pgk
pval_distribution_plot	pval_distribution_plot
qc_charge_states	qc_charge_states
qc_contaminants	qc_contaminants
qc_cvs	qc_cvs
qc_data_completeness	qc_data_completeness
qc_ids	qc_ids
qc_intensity_distribution	qc_intensity_distribution
qc_median_intensities	qc_median_intensities
qc_missed_cleavages	qc_missed_cleavages
qc_pca	qc_pca
qc_peak_width	qc_peak_width
qc_peptide_type	qc_peptide_type
qc_proteome_coverage	qc_proteome_coverage
qc_ranked_intensities	qc_ranked_intensities
qc_sample_correlation	qc_sample_correlation
qc_sequence_coverage	qc_sequence_coverage
randomise_queue	randomise_queue
rapamycin_10uM	rapamycin_10uM
rapamycin_dose_response	rapamycin_dose_response
read_protti	read_protti
replace_identified_by_x	replace_identified_by_x
scale_protti	scale_protti
sequence_coverage	sequence_coverage
split_metal_name	split_metal_name
treatment_enrichment	treatment_enrichment
try_query	try_query
ttest_protti	ttest_protti
viridis_colours	viridis_colours
volcano_plot	volcano_plot
volcano_protti	volcano_protti
woods_plot	woods_plot
