Kernel Based Regression Models

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Documentation for package ‘krm’ version 2022.10-17

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aa.prop.list Amino Acid Properties
aa2arabic Read a Fasta Sequence File
alignment2count Functions Related to Sequence Alignment
alignment2trancount Functions Related to Sequence Alignment
arabic2arabicFile Read a Fasta Sequence File
arabic2fastaFile Read a Fasta Sequence File
calcPairwiseIdentity Functions Related to Sequence Alignment
chi.norm A Transformation of Chi-squared Random Variable
cloud9 9-Component Mixture Dirichlet Prior for Protein Sequences
ddirichlet Functions related to mixture Dirichlet distribution
dmdirichlet Functions related to mixture Dirichlet distribution
fastaFile2arabicFile Read a Fasta Sequence File
getSeqKernel Protein Sequence Kernels
hmmMargLlik Functions related to profile HMM
krm Kernel-based Regression Models
krm.most Kernel-based Regression Model Maximum of adjusted Score Test
krm.score.test Adjusted Score Test
logIntegrateDirichlet Functions related to mixture Dirichlet distribution
logIntegrateMixDirichlet Functions related to mixture Dirichlet distribution
modifyDirichlet Functions related to mixture Dirichlet distribution
rdirichlet Functions related to mixture Dirichlet distribution
readArabicFile Read a Fasta Sequence File
readBlockFile Read a Fasta Sequence File
readFastaFile Read a Fasta Sequence File
readPriorFromFile Functions related to profile HMM
readSelexAsMatrix Read a Fasta Sequence File
readSelexFile Read a Fasta Sequence File
removeGap Functions Related to Sequence Alignment
rmdirichlet Functions related to mixture Dirichlet distribution
selexFile2arabicFile Read a Fasta Sequence File
sim.liu.2007 Simulate sDataset
sim.liu.2008 Simulate sDataset
string2arabic Read a Fasta Sequence File
stringList2arabicFile Read a Fasta Sequence File
writeFastaFile Read a Fasta Sequence File