| andes | Divergence-time estimation data for cis-trans-Andean pairs |
| concatNexus | concatNexus: Function for concatenation of nexus matrices both morphological and molecular |
| conflate | conflate: Calculate the conflation of multiple distributions pdfs, plot = TRUE, from, to, n, add = FALSE |
| crossplot | crossplot: Plot the median and HPD interval bars for pairs of distribution |
| c_truncauchy | c_truncauchy: Estimate the c parameter for the truncated cauchy L distribution to be used in MCMCTree |
| density_fun | density_fun: A way to represent distributions to be conflated |
| fasta2nexus | fasta2nexus (deprecated): Function for converting molecular alignments from fasta to nexus format |
| findParams | Function for estimation of probability density function parameters through quadratic optimization |
| laventa | Geochronology samples from the Honda Group in Colombia |
| lognormalBeast | Constructing a curve for the user-specified lognormal prior using Beast2 parameters |
| measureSimil | Calculate the Intersection Between Two Densities |
| mswd.test | Reduced chi-square test or mean square weighted deviation (mswd) test |
| quantile_conflation | quantile_conflation: Calculate the quantile for a given probabiliy under a conflated distribution |
| stratCI | stratCI: Estimate the confidence intervals of endpoints in stratigraphic intervals |
| summaryBrlen | summaryBrlen: Summarise branch lengths on trees with identical topology |
| table2nexus | table2nexus: Read a data matrix in delimited format and convert into a data matrix in nexus format |
| tnt2newick | tnt2newick: Function for converting from TNT tree format to newick parenthetical format |
| topoFreq | Frequency of topologies in a tree sample |
| xintercept | xintercept: Estimate the x-intercept of an empirical cdf |