| AA | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| AAfunc_Gauss_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| AAfunc_Laplace_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BB | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBfunc_Gauss_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBfunc_Laplace_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBfunc_mixGauss_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBpfunc_Gauss_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBpfunc_Laplace_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| BBpfunc_mixGauss_generic | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| getAAfunc_est_outer | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| getBBfunc_est | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| getBBfunc_est_outer | Helper functions for calculating gradient of least-squares Shuffled Isotonic Regression criterion, for Laplace or for Gaussian errors |
| gradDesc | Basic gradient descent implementation |
| gradDesc_fixed_df | Gradient Descent with a fixed number of constant pieces (degrees of freedom) |
| grad_SIR_generic | Gradient of least-squares Shuffled Isotonic Regression criterion |
| objective_fn_numint | Compute Unlinked Monotone Regression objective function numerically |
| quant_deconv | Carpentier and Schluter 2016 deconvolution method for unmatched monotone regression |
| UMR | UMR: For computing an estimator in Unlinked Monotone Regression. |
| UMRactiveSet | An active set approach to minimizing objective in Unlinked Monotone Regression |
| UMRactiveSet_trust | An active set approach to minimizing objective in Unlinked Monotone Regression |
| UMRactiveSet_trust2 | An active set approach to minimizing objective in Unlinked Monotone Regression |
| UMRgradDesc | Basic gradient descent implementation |
| UMRgradDesc_fixed_df | Gradient Descent with a fixed number of constant pieces (degrees of freedom) |
| UMRgradDesc_PC | Gradient Descent implemented for Piecewise Constant functions |
| UMRgrad_generic | Gradient of least-squares Shuffled Isotonic Regression criterion |
| UMRhess | Compute Hessian of Unlinked Monotone Regression objective function from Balabdaoui, Doss, and Durot |
| UMRhess_generic | Compute Hessian of Unlinked Monotone Regression objective function from Balabdaoui, Doss, and Durot |
| UMR_CC_generic | @title Second derivative computations of least-squares Unlinked Isotonic Regression criterion ("SIR" comes from "shuffled isotonic regression" although this terminology is now outdated). |
| UMR_curv_generic | @title Second derivative computations of least-squares Unlinked Isotonic Regression criterion ("SIR" comes from "shuffled isotonic regression" although this terminology is now outdated). |
| UMR_curv_generic2 | @title Second derivative computations of least-squares Unlinked Isotonic Regression criterion ("SIR" comes from "shuffled isotonic regression" although this terminology is now outdated). |
| umr_deconv | Carpentier and Schluter 2016 deconvolution method for unmatched monotone regression |