Calculate Distance Measures for a Given List of Data Frames with Factors

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Documentation for package ‘cmahalanobis’ version 0.5.0

• DESCRIPTION file.

Help Pages

cbhattacharyya	Calculate the Bhattacharyya distance for each species.
cbraycurtis	Calculate the Bray-Curtis distance for each species.
ccanberra	Calculate the Canberra distance for each species.
ccbhattacharyya	Calculate the Bhattacharyya distance for each species.
cchebyshev	Calculate the p_values matrix for each species, using Chebyshev distance as a base.
ccosine	Calculate the Cosine distance of a factor in a dataframe.
ceuclide	Calculate the Euclidean distance of a factor in a dataframe.
chamming	Calculate the Hamming distance of a factor in a dataframe.
chellinger	Calculate the Hellinger distance for each species.
cjaccard	Calculate the Jaccard distance for each species.
cmahalanobis	Calculate the Mahalanobis distance for each species.
cmanhattan	Calculate a Manhattan distance of a factor in a dataframe.
cminkowski	Calculate the Minkowski distance of a factor in a dataframe.
csorensendice	Calculate the Sorensen-Dice distance for each species.
generate_report_cbhattacharyya	Generate a Microsoft Word document about the Bhattacharyya distance matrix and the p-values matrix with corresponding plots.
generate_report_cbraycurtis	Generate a Microsoft Word document about the Bray-Curtis distance matrix and the p-values matrix with corresponding plots.
generate_report_ccanberra	Generate a Microsoft Word document about the Canberra distance matrix and the p-values matrix with corresponding plots.
generate_report_cchebyshev	Generate a Microsoft Word document about the Chebyshev distance matrix and the p-values matrix with corresponding plots.
generate_report_ccosine	Generate a Microsoft Word document about the Cosine distance matrix and the p-values matrix with corresponding plots.
generate_report_ceuclide	Generate a Microsoft Word document about the Euclidean distance matrix and the p-values matrix with relative plots.
generate_report_chamming	Generate a Microsoft Word document about the Hamming distance matrix and the p-values matrix with corresponding plots.
generate_report_chellinger	Generate a Microsoft Word document about the Hellinger distance matrix and the p-values matrix with corresponding plots.
generate_report_cjaccard	Generate a Microsoft Word document about the Jaccard distance matrix and the p-values matrix with corresponding plots.
generate_report_cmahalanobis	Generate a Microsoft Word document about Mahalanobis distance matrix and p-values matrix with corresponding plots.
generate_report_cmanhattan	Generate a Microsoft Word document about the Manhattan distance and the p-values matrices with corresponding plots.
generate_report_cminkowski	Generate a Microsoft Word document about the Minkowski distance matrix and the p-values matrix with corresponding plots.
generate_report_csorensendice	Generate a Microsoft Word document about the Sorensen-Dice distance matrix and the p-values matrix with corresponding plots.
pvaluescbatt	Calculate the p_values matrix for each species, using Bhattacharyya distance as a base.
pvaluescbrcu	Calculate the p_values matrix for each species, using Bray-Curtis distance as a base.
pvaluesccanb	Calculate the p_values matrix for each species, using Canberra distance as a base.
pvaluesccheb	Calculate the p_values matrix for each species, using Chebyshev distance as a base.
pvaluesccosi	Calculate the p_values matrix for each species, using Cosine distance as a base.
pvaluesceucl	Calculate the p_values matrix for each species, using the Euclidean distance as a base.
pvalueschamm	Calculate the p_values matrix for each species, using Hamming distance as a base.
pvalueschell	Calculate the p_values matrix for each species, using Hellinger distance as a base.
pvaluescjacc	Calculate the p_values matrix for each species, using Jaccard distance as a base.
pvaluescmaha	Calculate p_values matrix for each species, using Mahalanobis distance as a base.
pvaluescmanh	Calculate the p_values matrix for each species, using Manhattan distance as a base.
pvaluescmink	Calculate the p_values matrix for each species, using Minkowski distance as a base.
pvaluescsore	Calculate the p_values matrix for each species, using Sorensen-Dice distance as a base.