| distory-package | Distance Between Phylogenetic Histories |
| bethe.tree | Bethe Tree |
| bin.multiPhylo | Bin Trees |
| boot.samples.idxs | Find MCMC Target Sequence |
| convert.table.to.idx | Find MCMC Target Sequence |
| dist.multiPhylo | Geodesic Distance Between Phylogenetic Trees |
| distinct.edges | Differences Between Phylogenetic Trees |
| distory | Distance Between Phylogenetic Histories |
| edge.from.split | Differences Between Phylogenetic Trees |
| get.bipartition | Differences Between Phylogenetic Trees |
| gromov.hyperbolicity | Gromov Hyperbolicity Constant |
| lookup.samples | Find MCMC Target Sequence |
| mcmc.target.seq | Find MCMC Target Sequence |
| orthant.boundary.tree | Orthant Boundary Tree |
| partition.leaves | Differences Between Phylogenetic Trees |
| phylo.diff | Differences Between Phylogenetic Trees |
| position.leverage | Position Leverage |