A GUI for Dual and Bulk RNA-Sequencing Analysis
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Documentation for package ‘inDAGO’ version 1.0.0
Help Pages
| barplotExp | barplotExp |
| BaseAverageQualityPlot | BaseAverageQualityPlot |
| BaseAverageQualityPlotly | interactive BaseAverageQualityPlot |
| BaseCompositionAreaChartPlot | BaseCompositionAreaChartPlot |
| BaseCompositionLinePlot | BaseCompositionLinePlot |
| BaseQualityBoxplotPlot | BaseQualityBoxplotPlot |
| boxplotExp | boxplotExp |
| BulkAlignment | Bulk alignment function |
| checkMetadata | checkMetadata |
| CombinedAlignment | Title |
| CorrPlotHeatmap | CorrPlotHeatmap |
| CorrPlotHeatmaply | CorrPlotHeatmaply |
| counting_Reads | COUNTING SEQUENCES |
| DEGsServerLogic | Server function for DEGs module in Shiny application |
| DEGsUserInterface | UI function for DEGs module in Shiny application |
| EDAServerLogic | Server function for EDA module in Shiny application |
| EDAUserInterface | UI function for EDA module in Shiny application |
| EdgerDEG | EdgerDEG |
| Filtering | Filtering |
| FilteringServerLogic | Server function for filtering module in Shiny application |
| FilteringUserInterface | UI function for filtering module in Shiny application |
| GCcontentDistributionPlot | GCcontentDistributionPlot |
| GCcontentDistributionPlotly | interactive GCcontentDistributionPlot |
| getDegMerged | getDegMerged |
| GetEdgerY | GetEdgerY |
| HeatmapExp | HeatmapExp |
| HeatmapExpPlotly | HeatmapExpPlotly |
| inDAGO | inDAGO |
| IndexingBulk | Bulk indexing |
| IndexingBulkServerLogic | Indexing bulk server logic |
| IndexingBulkUserInterface | Indexing bulk ui |
| IndexingComb | Combined indexing |
| IndexingCombinedServerLogic | Indexing combined server logic |
| IndexingCombinedUserInterface | Indexing combined ui |
| IndexingSequentialParallel | Indexing sequential parallel |
| IndexingSequentialProgressive | Indexing sequential progressive |
| IndexingSequentialServerLogic | Indexing sequential server logic |
| IndexingSequentialUserInterface | Indexing sequential ui |
| mappingBulkServerLogic | Mapping bulk server logic |
| mappingBulkUserInterface | Mapping bulk ui |
| mappingCombinedServerLogic | Mapping combined server logic |
| mappingCombinedUserInterface | Mapping combined ui |
| mappingSequentialServerLogic | Mapping sequential server logic |
| mappingSequentialUserInterface | Mapping sequential ui |
| mdsinfo | mdsinfo |
| mdsPlot | mdsPlot |
| mdsPlottly | mdsPlottly |
| pcainfo | pcainfo |
| pcaPlot | pcaPlot |
| pcaPlottly | pcaPlottly |
| QualityCheckAnalysis | QUALITY CONTROL ANALYSIS |
| qualityControlServerLogic | Quality control server logic |
| qualityControlUserInterface | Quality control ui |
| Saturation | Saturation |
| SequenceLengthDistributionPlot | SequenceLengthDistributionPlot |
| SequenceLengthDistributionPlotly | interactive SequenceLengthDistributionPlot |
| SequentialAlignment | Sequential alignment function |
| Summarization | Summarization |
| SummarizationServerLogic | Server function for Summarization module in Shiny application |
| SummarizationUserInterface | UI function for Summarization module in Shiny application |
| UpsetjsPlot | UpsetjsPlot |
| UpSetPlot | UpSetPlot |
| volcanoPlot | volcanoPlot |
| volcanoPlottly | volcanoPlottly |
| WorkflowServerLogic | Server function for workflow module in Shiny application |
| WorkflowUserInterface | UI function for workflow module in Shiny application |