Simulation-Based Inference Methods for Infectious Disease Models

---

Documentation for package ‘SimBIID’ version 0.2.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

SimBIID-package	Simulation-based inference for infectious disease models
ABCRef	Produces ABC reference table
ABCSMC	Runs ABC-SMC algorithm
ABCSMC.ABCSMC	Runs ABC-SMC algorithm
ABCSMC.default	Runs ABC-SMC algorithm
compileRcpp	Compiles 'SimBIID_model' object
ebola	Time series counts of ebola cases
mparseRcpp	Parse custom model using 'SimInf' style markup
plot.ABCSMC	Plots 'ABCSMC' objects
plot.PMCMC	Plots 'PMCMC' objects
plot.SimBIID_runs	Plots 'SimBIID_runs' objects
PMCMC	Runs particle MCMC algorithm
PMCMC.default	Runs particle MCMC algorithm
PMCMC.PMCMC	Runs particle MCMC algorithm
predict.PMCMC	Predicts future course of outbreak from 'PMCMC' objects
print.ABCSMC	Prints 'ABCSMC' objects
print.PMCMC	Prints 'PMCMC' objects
print.SimBIID_model	Prints 'SimBIID_model' objects
print.SimBIID_runs	Prints 'SimBIID_runs' objects
run	Runs 'SimBIID_model' object
SimBIID	Simulation-based inference for infectious disease models
smallpox	Time series counts of smallpox cases
summary.ABCSMC	Summarises 'ABCSMC' objects
summary.PMCMC	Summarises 'PMCMC' objects
window.PMCMC	Time windows for 'PMCMC' objects