Analysing 'SNP' Data to Support Captive Breeding

Documentation for package ‘dartR.captive’ version 1.0.2

gl.assign.grm	Population assignment using grm
gl.assign.mahalanobis	Assign an individual of unknown provenance to population based on Mahalanobis Distance
gl.assign.pa	Eliminates populations as possible source populations for an individual of unknown provenance, using private alleles
gl.assign.pca	Assign an individual of unknown provenance to population based on PCA
gl.filter.parent.offspring	Filters putative parent offspring within a population
gl.grm	Calculates an identity by descent matrix
gl.grm.network	Represents a genomic relationship matrix (GRM) as a network
gl.plot.network	Represents a distance or dissimilarity matrix as a network
gl.report.parent.offspring	Identifies putative parent offspring within a population
gl.run.EMIBD9	Run program EMIBD9
gl.sim.relatedness	Simulate relatedness estimates.
utils.assignment	Population assignment probabilities
utils.assignment_2	Population assignment probabilities
utils.assignment_3	Population assignment probabilities
utils.assignment_4	Population assignment probabilities