| cake |
Breakage Angle of Chocolate Cakes |
| cbpp |
Contagious bovine pleuropneumonia |
| checkConv |
Extended Convergence Checking |
| coef.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| confint.merMod |
Compute Confidence Intervals for Parameters of a [ng]lmer Fit |
| confint.thpr |
Compute Confidence Intervals for Parameters of a [ng]lmer Fit |
| convergence |
Assessing Convergence for Fitted Models |
| cooks.distance.influence.merMod |
Influence Diagnostics for Mixed-Effects Models |
| cooks.distance.merMod |
Influence Diagnostics for Mixed-Effects Models |
| cov2sdcor |
Convert between representations of (co-)variance structures |
| Cv_to_Sv |
Convert between representations of (co-)variance structures |
| Cv_to_Vv |
Convert between representations of (co-)variance structures |
| factorize |
Attempt to convert grouping variables to factors |
| family.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| findbars |
Determine random-effects expressions from a formula |
| fitted.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| fixed.effects |
Extract fixed-effects estimates |
| fixef |
Extract fixed-effects estimates |
| fixef.merMod |
Extract fixed-effects estimates |
| formatVC |
Print and Summary Method Utilities for Mixed Effects |
| formula.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| fortify |
add information to data based on a fitted model |
| fortify.merMod |
add information to data based on a fitted model |
| getData |
add information to data based on a fitted model |
| getData.merMod |
add information to data based on a fitted model |
| getL |
Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| getL-method |
Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| getME |
Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| getME.merMod |
Extract or Get Generalized Components from a Fitted Mixed Effects Model |
| GHrule |
Univariate Gauss-Hermite quadrature rule |
| glFormula |
Modular Functions for Mixed Model Fits |
| glmer |
Fitting Generalized Linear Mixed-Effects Models |
| glmer.nb |
Fitting Negative Binomial GLMMs |
| glmerControl |
Control of Mixed Model Fitting |
| glmerLaplaceHandle |
Handle for 'glmerLaplace' |
| glmerMod-class |
Class "merMod" of Fitted Mixed-Effect Models |
| glmFamily |
Generator object for the 'glmFamily' class |
| glmFamily-class |
Class '"glmFamily"' - a reference class for 'family' |
| glmResp |
Generator objects for the response classes |
| glmResp-class |
Reference Classes for Response Modules, '"(lm|glm|nls|lmer)Resp"' |
| golden |
Class '"golden"' and Generator for Golden Search Optimizer Class |
| golden-class |
Class '"golden"' and Generator for Golden Search Optimizer Class |
| GQdk |
Sparse Gaussian / Gauss-Hermite Quadrature grid |
| GQN |
Sparse Gaussian / Gauss-Hermite Quadrature grid |
| grouseticks |
Data on red grouse ticks from Elston et al. 2001 |
| grouseticks_agg |
Data on red grouse ticks from Elston et al. 2001 |
| lFormula |
Modular Functions for Mixed Model Fits |
| llikAIC |
Print and Summary Method Utilities for Mixed Effects |
| lme4 |
Linear, generalized linear, and nonlinear mixed models |
| lme4_testlevel |
Detect testing level for lme4 examples and tests |
| lmer |
Fit Linear Mixed-Effects Models |
| lmerControl |
Control of Mixed Model Fitting |
| lmerMod-class |
Class "merMod" of Fitted Mixed-Effect Models |
| lmerResp |
Generator objects for the response classes |
| lmerResp-class |
Reference Classes for Response Modules, '"(lm|glm|nls|lmer)Resp"' |
| lmList |
Fit List of lm or glm Objects with a Common Model |
| lmList4-class |
Class "lmList4" of 'lm' Objects on Common Model |
| lmResp |
Generator objects for the response classes |
| lmResp-class |
Reference Classes for Response Modules, '"(lm|glm|nls|lmer)Resp"' |
| log.thpr |
Profile method for merMod objects |
| logLik.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| logProf |
Profile method for merMod objects |
| mcmcsamp |
Getting p-values for fitted models |
| merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| merMod-class |
Class "merMod" of Fitted Mixed-Effect Models |
| merPredD |
Generator object for the 'merPredD' class |
| merPredD-class |
Class '"merPredD"' - a Dense Predictor Reference Class |
| methTitle |
Print and Summary Method Utilities for Mixed Effects |
| mkDataTemplate |
Make templates suitable for guiding mixed model simulations |
| mkGlmerDevfun |
Modular Functions for Mixed Model Fits |
| mkLmerDevfun |
Modular Functions for Mixed Model Fits |
| mkMerMod |
Create a 'merMod' Object |
| mkNewReTrms |
Make Random Effect Terms: Create Z, Lambda, Lind, etc. |
| mkParsTemplate |
Make templates suitable for guiding mixed model simulations |
| mkRespMod |
Create an lmerResp, glmResp or nlsResp instance |
| mkReTrms |
Make Random Effect Terms: Create Z, Lambda, Lind, etc. |
| mkVarCorr |
Make Variance and Correlation Matrices from 'theta' |
| mlist2vec |
Convert between representations of (co-)variance structures |
| model.frame.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| model.matrix.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| modular |
Modular Functions for Mixed Model Fits |
| namedList |
Self-naming list function |
| negative.binomial |
Fitting Negative Binomial GLMMs |
| NelderMead |
Class '"NelderMead"' of Nelder-Mead optimizers and its Generator |
| NelderMead-class |
Class '"NelderMead"' of Nelder-Mead optimizers and its Generator |
| Nelder_Mead |
Nelder-Mead Optimization of Parameters, Possibly (Box) Constrained |
| ngrps |
Number of Levels of a Factor or a "merMod" Model |
| ngrps.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| nlformula |
Manipulate a Nonlinear Model Formula |
| nlmer |
Fitting Nonlinear Mixed-Effects Models |
| nlmerControl |
Control of Mixed Model Fitting |
| nlmerMod-class |
Class "merMod" of Fitted Mixed-Effect Models |
| nlminbwrap |
Wrappers for additional optimizers |
| nloptwrap |
Wrappers for additional optimizers |
| nlsResp |
Generator objects for the response classes |
| nlsResp-class |
Reference Classes for Response Modules, '"(lm|glm|nls|lmer)Resp"' |
| nobars |
Omit terms separated by vertical bars in a formula |
| nobs |
Class "merMod" of Fitted Mixed-Effect Models |
| nobs.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| sdcor2cov |
Convert between representations of (co-)variance structures |
| show-method |
Class "lmList4" of 'lm' Objects on Common Model |
| show-method |
Class "merMod" of Fitted Mixed-Effect Models |
| show.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| show.summary.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| sigma |
Extract Residual Standard Deviation 'Sigma' |
| sigma.merMod |
Extract Residual Standard Deviation 'Sigma' |
| simulate.formula |
A 'simulate' Method for 'formula' objects that dispatches based on the Left-Hand Side |
| simulate.merMod |
Simulate Responses From 'merMod' Object |
| sleepstudy |
Reaction times in a sleep deprivation study |
| splom.thpr |
Mixed-Effects Profile Plots (Regular / Density / Pairs) |
| subbars |
"Sub[stitute] Bars" |
| summary.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| summary.summary.merMod |
Class "merMod" of Fitted Mixed-Effect Models |
| Sv_to_Cv |
Convert between representations of (co-)variance structures |
| VarCorr |
Extract Variance and Correlation Components |
| VarCorr.merMod |
Extract Variance and Correlation Components |
| varianceProf |
Profile method for merMod objects |
| vcconv |
Convert between representations of (co-)variance structures |
| vcov.merMod |
Covariance matrix of estimated parameters |
| vcov.summary.merMod |
Covariance matrix of estimated parameters |
| vec2mlist |
Convert between representations of (co-)variance structures |
| vec2STlist |
Convert between representations of (co-)variance structures |
| VerbAgg |
Verbal Aggression item responses |
| Vv_to_Cv |
Convert between representations of (co-)variance structures |
| .makeCC |
Control of Mixed Model Fitting |
| .prt.aictab |
Print and Summary Method Utilities for Mixed Effects |
| .prt.call |
Print and Summary Method Utilities for Mixed Effects |
| .prt.family |
Print and Summary Method Utilities for Mixed Effects |
| .prt.grps |
Print and Summary Method Utilities for Mixed Effects |
| .prt.methTit |
Print and Summary Method Utilities for Mixed Effects |
| .prt.resids |
Print and Summary Method Utilities for Mixed Effects |
| .prt.VC |
Print and Summary Method Utilities for Mixed Effects |
| .prt.warn |
Print and Summary Method Utilities for Mixed Effects |
| .simulateFun |
Simulate Responses From 'merMod' Object |
| || |
Expand terms with "||" notation into separate "|" terms |