REST API Client for the 'PGS' Catalog
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Documentation for package ‘quincunx’ version 0.1.10
Help Pages
| ancestry_categories | Ancestry categories and classes |
| bind | Bind PGS Catalog objects |
| clear_cache | Clear quincunx cache of memoised functions |
| cohorts-class | An S4 class to represent a set of cohorts |
| get_ancestry_categories | Get ancestry categories and classes |
| get_cohorts | Get PGS Catalog Cohorts |
| get_performance_metrics | Get PGS Catalog Performance Metrics |
| get_publications | Get PGS Catalog Publications |
| get_releases | Get PGS Catalog Releases |
| get_sample_sets | Get PGS Catalog Sample Sets |
| get_scores | Get PGS Catalog Scores |
| get_traits | Get PGS Catalog Traits |
| get_trait_categories | Get PGS Catalog Trait Categories |
| intersect | Set operations on PGS Catalog objects |
| n | Number of PGS Catalog entities |
| n-method | Number of PGS Catalog entities |
| open_in_dbsnp | Browse dbSNP from SNP identifiers. |
| open_in_pgs_catalog | Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface |
| open_in_pubmed | Browse PubMed from PubMed identifiers. |
| performance_metrics-class | An S4 class to represent a set of PGS Catalog Performance Metrics |
| pgp_to_pgs | Map PGP identifiers to PGS identifiers |
| pgp_to_ppm | Map PGP identifiers to PPM identifiers |
| pgp_to_pss | Map PGP identifiers to PSS identifiers |
| pgs_to_pgp | Map PGS identifiers to PGP identifiers |
| pgs_to_ppm | Map PGS identifiers to PPM identifiers |
| pgs_to_pss | Map PGS identifiers to PSS identifiers |
| pgs_to_study | Map PGS identifiers to GWAS study identifiers |
| ppm_to_pgp | Map PPM identifiers to PGP identifiers |
| ppm_to_pgs | Map PPM identifiers to PGS identifiers |
| ppm_to_pss | Map PPM identifiers to PSS identifiers |
| pss_to_pgp | Map PSS identifiers to PGP identifiers |
| pss_to_pgs | Map PSS identifiers to PGS identifiers |
| pss_to_ppm | Map PSS identifiers to PPM identifiers |
| publications-class | An S4 class to represent a set of PGS Catalog Publications |
| read_scoring_file | Read a polygenic scoring file |
| releases-class | An S4 class to represent a set of PGS Catalog Releases |
| sample_sets-class | An S4 class to represent a set of PGS Catalog Sample Sets |
| scores-class | An S4 class to represent a set of PGS Catalog Polygenic Scores |
| setdiff | Set operations on PGS Catalog objects |
| setequal | Set operations on PGS Catalog objects |
| setop | Set operations on PGS Catalog objects |
| stages | Study stages |
| study_to_pgs | Map GWAS studies identifiers to PGS identifiers |
| traits-class | An S4 class to represent a set of PGS Catalog Traits |
| trait_categories-class | An S4 class to represent a set of PGS Catalog Trait Categories |
| union | Set operations on PGS Catalog objects |
| write_xlsx | Export a PGS Catalog object to xlsx |