35334f986420124f22ff588ca2fc3dab *DESCRIPTION
f0d50c80c9b44c8cdd22e953f5f8c164 *NAMESPACE
269d70a405eb546750707439bc822f99 *R/L_matrix_Generation.R
c5d5981c146193533dd7c978008627e3 *R/V_matrix_Generation.R
22ebbc26aebe31129af46b54880ba1c1 *R/constants.R
9b23d3a11b15b1b0f78eadf81de05fb5 *R/input_conversion.R
0f29c8252bad2b6967e2a81fdedd1bc3 *R/mappingSignature.R
d2f3b897d210cca68916041cbdf4b547 *R/source.R
24142c88dc0e004ec4adb75d91db8911 *R/source_check.R
0ce65f814f7a07bee2db9b229b097bae *data/RefTMB.rda
2a90becfe948054f4c9c0ca53ee21dff *data/SimData.rda
1b85122142f2df162f955d921f193af5 *inst/extdata/SimData_W_TMB.rda
68bc568c143b2c4f1ebf70e24df5a301 *inst/extdata/refitting_examples/DBS_MAF_two_samples.txt
def950bfe69d363ce2a1b6e728b28699 *inst/extdata/refitting_examples/SATS_example_panel.bed
6161f641d2abcecf3dc24206c0db55fc *inst/extdata/refitting_examples/SBS_MAF_two_samples.txt
99fef56a5717889ec10a2d281ad825cb *inst/extdata/refitting_examples/SBS_two_variants.vcf
7c1da7784da258a081949650c02a37c3 *inst/extdata/test_objects/test_CalculateSignatureBurdens.rda
b7d4dd5ef2aca5889220c7c09f47c213 *inst/extdata/test_objects/test_EstimateSigActivity.rda
0288b9c172303603e24197df3036eb75 *inst/extdata/test_objects/test_GeneratePanelSize.rda
da63ec88535073bfcef441d6761cec54 *man/CalculateSignatureBurdens.Rd
ddca505fa67acd9a0ad8b368f181d12f *man/EstimateSigActivity.Rd
a3f3577709a720006e9144792a8c4402 *man/GenerateLMatrix.Rd
59caecfee0bb1733eff7d51d7013f48b *man/GeneratePanelSize.Rd
7826011032f654a0290f9a838304d7c7 *man/GenerateVMatrix.Rd
41085e176ad43ccd253e71b53f6a023d *man/MappingSignature.Rd
6e8d0d9f3e9417e8305834cd5531c78b *man/ReadBEDAsPanelInfo.Rd
ff04b6d0f8e06f91b954d31cd2f063e9 *man/ReadVCFAsMutationRecord.Rd
5caca3a484bb5d3d42b56b938f7cfea6 *man/RefTMB.Rd
6a50ef84428985d3f185729f71c5a8de *man/SATS-package.Rd
774670181f00b01a9802608a1b6944ef *man/SimData.Rd
c40b2026fe7a49afd40eb843dffda498 *man/ValidateSATSInputs.Rd
bb2e80964505ac06647a3a954db1f05b *src/SATS_init.c
ae7abd337793940a4785f66ad8d306d9 *src/source.c
6cf81f469b7c00efd27bc61bc0849b30 *tests/testthat.R
e3e38c6167ec4b344319ccb3da2a896e *tests/testthat/test-CalculateSignatureBurdens.R
228aa11d1f55a9be6b6ee07dcd353cd4 *tests/testthat/test-EstimateSigActivity.R
5d6c2229ae30d4a236e523187b83f3bc *tests/testthat/test-GeneratePanelSize.R
01b8c8a301584eb4f0e67833151dea48 *tests/testthat/test-GenerateVMatrix.R
619b15d8ffb49f735d249c19d6e769bd *tests/testthat/test-ValidateSATSInputs.R
a7c85595f13e8d1420648c43a05601a3 *tests/testthat/test-input-conversion.R
