Last updated on 2026-06-22 01:51:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.5 | 3.04 | 28.94 | 31.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.5 | 2.07 | 22.44 | 24.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.5 | 48.49 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.5 | 46.59 | OK | |||
| r-devel-windows-x86_64 | 1.2.5 | 5.00 | 49.00 | 54.00 | OK | |
| r-patched-linux-x86_64 | 1.2.5 | 3.22 | 26.85 | 30.07 | OK | |
| r-release-linux-x86_64 | 1.2.5 | 2.50 | 26.56 | 29.06 | OK | |
| r-release-macos-arm64 | 1.2.5 | 1.00 | 10.00 | 11.00 | OK | |
| r-release-macos-x86_64 | 1.2.5 | 2.00 | 32.00 | 34.00 | OK | |
| r-release-windows-x86_64 | 1.2.5 | 4.00 | 51.00 | 55.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.5 | 1.00 | 12.00 | 13.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2.5 | 2.00 | 32.00 | 34.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.5 | 5.00 | 55.00 | 60.00 | OK |
Version: 1.2.5
Check: examples
Result: ERROR
Running examples in ‘LSDinterface-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read.3d.lsd
> ### Title: Read one instance of LSD variables (time series) from multiple
> ### LSD results files into a 3D array
> ### Aliases: read.3d.lsd
> ### Keywords: interface file datasets database
>
> ### ** Examples
>
> # get the list of file names of example LSD results
> files <- list.files.lsd( system.file( "extdata", package = "LSDinterface" ) )
>
> # read first instance of all variables from files (one level each),
> # pasting the directory where the example files are (not required if in working dir)
> inst1Array <- read.3d.lsd( files )
> print( inst1Array[ 5 : 10, 1 : 7, 1 ] )
GDP Creal Ir Am G Def Deb
5 144217 144039 0 1.01288 43563.1 36909.5 176169
6 142174 143096 0 1.01295 44389.3 37586.6 213756
7 142059 143048 0 1.01290 44436.0 37560.6 251316
8 142994 143479 0 1.01291 44060.6 37154.1 288470
9 143953 143921 0 1.01293 43678.4 36741.0 325212
10 149207 158313 4800 1.06524 28077.0 19285.3 344497
> print( inst1Array[ 5 : 10, 1 : 7, 2 ] )
GDP Creal Ir Am G Def Deb
5 205459 193031 1894 1.19304 28449.7 18661.70 129383
6 241479 234479 6629 1.20958 0.0 -11007.50 118376
7 288524 246075 1800 1.34235 10443.6 -1086.73 117289
8 243209 229686 2276 1.35719 28812.9 17090.70 134380
9 231582 238297 5339 1.37823 25263.8 10334.80 144715
10 281105 262832 4511 1.47249 16346.7 -5168.78 139546
> print( inst1Array[ 5 : 10, 1 : 7, 3 ] )
GDP Creal Ir Am G Def Deb
5 250935 246425 4510 1.19865 2.42868e-10 -9938.76 85142.0
6 282247 260655 3272 1.29306 3.75949e+03 -8459.68 76682.3
7 303350 262511 1974 1.37372 7.61877e+03 -14106.60 62575.7
8 264017 273720 7130 1.33948 1.11946e-10 -12136.00 50439.8
9 304904 268322 2643 1.50057 1.61858e+04 -1768.21 48671.6
10 305890 272745 3140 1.51026 1.57738e+04 -31140.90 17530.7
>
> # read first instance of a set of variables named _A1p and _growth1
> ab1Array <- read.3d.lsd( files, c( "_A1p", "_growth1" ) )
> print( ab1Array[ 20 : 25, , 1 ] )
X_A1p X_growth1
20 1.14939 -0.195745
21 1.21002 0.179744
22 1.21002 -0.112555
23 1.28702 -0.524151
24 1.35346 1.013820
25 1.41205 -1.719230
> print( ab1Array[ 20 : 25, , 2 ] )
X_A1p X_growth1
20 1.91852 NA
21 1.91852 0.934309
22 1.91852 2.717530
23 2.06289 -1.270610
24 2.06289 0.793031
25 2.11699 -0.273837
> print( ab1Array[ 20 : 25, , 3 ] )
X_A1p X_growth1
20 1.48581 -0.700694
21 1.49959 1.430750
22 1.83989 -4.234110
23 1.83989 3.056360
24 2.06721 0.644945
25 2.06721 -1.829500
>
> # read instance 2 of all variables, skipping the initial 20 time steps
> # and keeping up to 30 time steps (from t = 21 up to t = 30)
> inst2Array21_30 <- read.3d.lsd( files, skip = 20, nrows = 30, instance = 2 )
> print( inst2Array21_30[ , , "Sim1_1" ] ) # use the file name to retrieve
X_A1p X_growth1
21 1.38510 NA
22 1.21002 NA
23 1.28702 0.405465
24 1.35346 -1.609440
25 1.41205 -0.646627
26 1.41205 1.493930
27 1.41205 -1.326870
28 1.41205 2.126400
29 1.35264 -1.513290
30 1.35264 1.756420
31 1.61918 -1.408110
32 1.64366 0.984499
33 1.56246 NA
34 1.65734 NA
35 1.72247 NA
36 1.72247 NA
37 1.78119 -2.965270
38 1.78119 3.135490
39 1.89250 -0.482252
40 2.09943 -2.876390
41 2.19748 3.135490
42 2.25242 1.446920
43 2.43990 -1.943360
44 2.49138 0.710847
45 2.60173 0.887819
46 2.47143 -0.447868
47 2.71046 0.695968
48 2.71046 -0.487623
49 2.92397 -0.789375
50 3.13114 -0.405465
> print( inst2Array21_30[ , , "Sim1_2" ] )
X_A1p X_growth1
21 1.91852 -1.7595000
22 1.91852 1.8075100
23 2.10318 0.0458095
24 2.11699 0.0650048
25 2.11699 -0.4519850
26 2.29247 0.1986710
27 2.41508 0.4999560
28 2.49581 0.5173620
29 2.57488 -2.1433300
30 2.71836 0.1053610
31 2.83847 1.3480700
32 3.01807 -0.3364720
33 3.01807 0.0870114
34 3.01807 -0.5248120
35 2.96236 0.6201220
36 3.06116 -1.8382800
37 3.06116 NA
38 3.01993 NA
39 3.23358 NA
40 3.23358 NA
41 3.24266 NA
42 3.46812 NA
43 3.43725 NA
44 3.65473 NA
45 3.14856 NA
46 3.29654 NA
47 3.29654 NA
48 3.29654 NA
49 1.01578 NA
50 4.69405 NA
>
> # read instance 5 of all variables in second-level objects, using up to 2 cores
> inst5array2 <- read.3d.lsd( files, instance = 2, posit = "*_*",
+ posit.match = "glob", nnodes = 2 )
Error in serverSocket(port = port) :
creation of server socket failed: port 11308 cannot be opened
Calls: read.3d.lsd ... run.parallel -> <Anonymous> -> makePSOCKcluster -> serverSocket
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc