Last updated on 2026-04-29 00:53:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 116.02 | ERROR | |||
| r-release-macos-arm64 | 0.1.0 | 1.00 | 28.00 | 29.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/528s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OmopStudyBuilder)
>
> test_check("OmopStudyBuilder")
Saving _problems/test-linkGitHub-203.R
[6/27] <08><08><08><08><08><08><08>[7/27] <08><08><08><08><08><08><08>[8/27] <08><08><08><08><08><08><08>[9/27] <08><08><08><08><08><08><08>[10/27] <08><08><08><08><08><08><08><08>[11/27] <08><08><08><08><08><08><08><08>[12/27] <08><08><08><08><08><08><08><08>[13/27] <08><08><08><08><08><08><08><08>[14/27] <08><08><08><08><08><08><08><08>[15/27] <08><08><08><08><08><08><08><08>[16/27] <08><08><08><08><08><08><08><08>[17/27] <08><08><08><08><08><08><08><08>[18/27] <08><08><08><08><08><08><08><08>[19/27] <08><08><08><08><08><08><08><08>[20/27] <08><08><08><08><08><08><08><08>[21/27] <08><08><08><08><08><08><08><08>[22/27] <08><08><08><08><08><08><08><08>[23/27] <08><08><08><08><08><08><08><08>[24/27] <08><08><08><08><08><08><08><08>[25/27] <08><08><08><08><08><08><08><08>[26/27] <08><08><08><08><08><08><08><08>[27/27] The following package(s) were not installed successfully:
- [httr]: install failed
- [CodelistGenerator]: install failed
- [CDMConnector]: dependency failed (httr)
- [CohortCharacteristics]: dependency failed (CDMConnector)
- [CohortConstructor]: dependency failed (CodelistGenerator)
- [DrugUtilisation]: dependency failed (CodelistGenerator)
- [IncidencePrevalence]: dependency failed (CDMConnector)
- [MeasurementDiagnostics]: dependency failed (CohortCharacteristics, CohortConstructor)
- [OmopSketch]: dependency failed (CohortConstructor)
- [PhenotypeR]: dependency failed (CodelistGenerator, CohortCharacteristics, CohortConstructor, DrugUtilisation, IncidencePrevalence, MeasurementDiagnostics, OmopSketch)
You may need to manually download and install these packages.
The following package(s) were not installed successfully:
- [httr]: install failed
- [CodelistGenerator]: install failed
- [CDMConnector]: dependency failed (httr)
- [CohortCharacteristics]: dependency failed (CDMConnector)
- [CohortConstructor]: dependency failed (CodelistGenerator)
- [DrugUtilisation]: dependency failed (CodelistGenerator)
- [IncidencePrevalence]: dependency failed (CDMConnector)
- [MeasurementDiagnostics]: dependency failed (CohortCharacteristics, CohortConstructor)
- [OmopSketch]: dependency failed (CohortConstructor)
- [PhenotypeR]: dependency failed (CodelistGenerator, CohortCharacteristics, CohortConstructor, DrugUtilisation, IncidencePrevalence, MeasurementDiagnostics, OmopSketch)
You may need to manually download and install these packages.
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• Integration test - requires built image (1): 'test-dockerWrapper.R:99:3'
• Integration test - requires built image and config file (1):
'test-dockerWrapper.R:107:3'
• Integration test - requires built image and test script (3):
'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3',
'test-dockerWrapper.R:115:3'
• Integration test - requires built rstudio image (4):
'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3',
'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3'
• Integration test - requires running container (2):
'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3'
• Integration test - requires valid renv project (2):
'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3'
• Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2):
'test-linkGitHub.R:308:3', 'test-linkGitHub.R:342:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-linkGitHub.R:200:3'): ensureGitIdentity errors when git identity is missing and user info is absent ──
Expected `OmopStudyBuilder:::ensureGitIdentity(temp_dir, NULL)` to throw a error.
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang