Last updated on 2026-05-30 12:50:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 46.08 | 469.35 | 515.43 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 137.00 | 1110.92 | 1247.92 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 138.00 | 1117.70 | 1255.70 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 81.00 | 590.00 | 671.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 0.34 | 2.34 | 2.68 | ERROR | |
| r-release-linux-x86_64 | 1.0.4 | 66.94 | 634.77 | 701.71 | OK | |
| r-release-macos-arm64 | 1.0.4 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.4 | 8.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.4 | 74.00 | 562.00 | 636.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.4 | 103.00 | 758.00 | 861.00 | OK |
Version: 1.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘TmCalculator.Rmd’ using rmarkdown
Quitting from TmCalculator.Rmd:125-181 [tm_viz]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `errorHandler()`:
---
Backtrace:
▆
1. └─TmCalculator::plot_tm_genome_tracks(...)
2. └─TmCalculator (local) create_chr_plot(chromosome_to_plot)
3. └─Gviz::IdeogramTrack(genome = genome_assembly, chromosome = chr)
4. └─methods::new(...)
5. ├─methods::initialize(value, ...)
6. └─Gviz::initialize(value, ...)
7. └─Gviz (local) .local(.Object, ...)
8. └─Gviz:::.cacheGenomes(genome = genome)
9. └─Gviz::.doCache(...)
10. ├─BiocGenerics::eval(expression, envir = callEnv)
11. ├─base::eval(expression, envir = callEnv)
12. │ └─base::eval(expression, envir = callEnv)
13. └─rtracklayer::ucscGenomes()
14. ├─restfulr::read(url$list$ucscGenomes)
15. └─restfulr::read(url$list$ucscGenomes)
16. ├─base::tryCatch(...)
17. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
18. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
19. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
20. └─x@protocol$read(x, cacheInfo)
21. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler)
22. └─restfulr (local) errorHandler(responseError)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TmCalculator.Rmd' failed with diagnostics:
--- failed re-building ‘TmCalculator.Rmd’
SUMMARY: processing the following file failed:
‘TmCalculator.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: package dependencies
Result: ERROR
Packages required but not available: 'Gviz', 'ggbio', 'karyoploteR'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘karyoploteR’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Packages required but not available: 'ggbio', 'karyoploteR'
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg38’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64