CRAN Package Check Results for Package braidReports

Last updated on 2024-09-27 01:49:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5.4 6.25 54.34 60.59 NOTE
r-devel-linux-x86_64-debian-gcc 0.5.4 4.87 39.01 43.88 NOTE
r-devel-linux-x86_64-fedora-clang 0.5.4 86.71 ERROR
r-devel-linux-x86_64-fedora-gcc 0.5.4 93.89 OK
r-devel-windows-x86_64 0.5.4 8.00 76.00 84.00 NOTE
r-patched-linux-x86_64 0.5.4 10.99 51.16 62.15 OK
r-release-linux-x86_64 0.5.4 7.35 50.98 58.33 OK
r-release-macos-arm64 0.5.4 29.00 OK
r-release-macos-x86_64 0.5.4 45.00 OK
r-release-windows-x86_64 0.5.4 9.00 75.00 84.00 OK
r-oldrel-macos-arm64 0.5.4 30.00 OK
r-oldrel-macos-x86_64 0.5.4 47.00 OK
r-oldrel-windows-x86_64 0.5.4 11.00 86.00 97.00 OK

Check Details

Version: 0.5.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: braidReports-package.Rd: braidrm-package es8analysis.Rd: es8olatmz, runBRAIDanalysis makeBRAIDreport.Rd: runBRAIDanalysis, scale_fill_gradientn, geom_point, geom_line potentiationPlot.Rd: geom_ribbon, geom_point, geom_line, geom_hline voronoi.Rd: geom_polygon Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.5.4
Check: R code for possible problems
Result: NOTE calculateIAE: no visible global function definition for ‘evalBRAIDrsm’ makeBRAIDreport: no visible global function definition for ‘evalBRAIDrsm’ makeBRAIDreport: no visible global function definition for ‘calcBRAIDconfint’ makeBRAIDreport : <anonymous>: no visible global function definition for ‘invertBRAIDrsm’ potentiationPlot: no visible global function definition for ‘calcBRAIDconfint’ potentiationPlot : <anonymous>: no visible global function definition for ‘evalBRAIDrsm’ potentiationPlot: no visible global function definition for ‘evalBRAIDrsm’ Undefined global functions or variables: calcBRAIDconfint evalBRAIDrsm invertBRAIDrsm Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.5.4
Check: Rd cross-references
Result: WARN Missing link or links in Rd file 'braidReports-package.Rd': ‘braidrm-package’ Missing link or links in Rd file 'es8analysis.Rd': ‘es8olatmz’ ‘runBRAIDanalysis’ Missing link or links in Rd file 'makeBRAIDreport.Rd': ‘runBRAIDanalysis’ See section 'Cross-references' in the 'Writing R Extensions' manual. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.5.4
Check: examples
Result: ERROR Running examples in ‘braidReports-Ex.R’ failed The error most likely occurred in: > ### Name: calculateIAE > ### Title: Calculate the Index of Achievable Efficacy > ### Aliases: calculateIAE > ### Keywords: misc > > ### ** Examples > > data(es8analysis) > bfit <- es8analysis$braidFit > # Modelled effect is base-10 logarithm of cell survival relative to negative controls, > # so a level of -2 reflects 99% cell killing > calculateIAE(bfit$fullpar,c(-1,-2),c(1.015*10^-6,5*10^-5)) Error in evalBRAIDrsm(sc1, sc2, parv) : could not find function "evalBRAIDrsm" Calls: calculateIAE Execution halted Flavor: r-devel-linux-x86_64-fedora-clang