Last updated on 2026-04-14 00:50:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.3 | 63.68 | 637.90 | 701.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.3 | 43.72 | 421.38 | 465.10 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.3 | 116.00 | 979.50 | 1095.50 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.3 | 127.00 | 1093.54 | 1220.54 | OK | |
| r-devel-macos-arm64 | 3.0.3 | 16.00 | 90.00 | 106.00 | OK | |
| r-devel-windows-x86_64 | 3.0.3 | 67.00 | 369.00 | 436.00 | OK | |
| r-patched-linux-x86_64 | 3.0.3 | 64.76 | 609.05 | 673.81 | OK | |
| r-release-linux-x86_64 | 3.0.3 | 54.96 | 597.96 | 652.92 | OK | |
| r-release-macos-arm64 | 3.0.3 | 16.00 | 101.00 | 117.00 | OK | |
| r-release-macos-x86_64 | 3.0.3 | 51.00 | 759.00 | 810.00 | OK | |
| r-release-windows-x86_64 | 3.0.3 | 64.00 | 0.00 | 64.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.3 | 16.00 | 103.00 | 119.00 | NOTE | |
| r-oldrel-macos-x86_64 | 3.0.3 | 53.00 | 807.00 | 860.00 | NOTE | |
| r-oldrel-windows-x86_64 | 3.0.3 | 93.00 | 504.00 | 597.00 | NOTE |
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘test-all.R’ [266s/348s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> # test only if exiftool is available
> if(Sys.which("exiftool") != ""){
+ test_check("camtrapR")
+ }
Loading required package: camtrapR
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 33
Total graph size: 386
Initializing model
NOTE: Stopping adaptation
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 32
Total graph size: 465
Initializing model
NOTE: Stopping adaptation
===== Monitors =====
thin = 1: alpha.obs.fixed.cont.effort, alpha0, beta.fixed.categ.some_factor, beta.fixed.cont.utm_y, beta0
===== Samplers =====
RW sampler (5)
- beta0
- alpha0
- alpha.obs.fixed.cont.effort
- beta.fixed.cont.utm_y
- beta.fixed.categ.some_factor[] (1 element)
|-------------|-------------|-------------|-------------|
|-------------------------------------------------------|
|-------------|-------------|-------------|-------------|
|-------------------------------------------------------|
|-------------|-------------|-------------|-------------|
|-------------------------------------------------------|
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 22
Total graph size: 331
Initializing model
NOTE: Stopping adaptation
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 57
Total graph size: 513
Initializing model
NOTE: Stopping adaptation
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 30
Total graph size: 313
Initializing model
NOTE: Stopping adaptation
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 31
Total graph size: 313
Initializing model
NOTE: Stopping adaptation
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 105
Unobserved stochastic nodes: 43
Total graph size: 353
Initializing model
NOTE: Stopping adaptation
Writing layer `test_detections' to data source `.' using driver `ESRI Shapefile'
Writing 3 features with 7 fields and geometry type Point.
adding: deployments.csv (deflated 54%)
adding: images.csv (deflated 48%)
Saving _problems/test-speciesAccum-77.R
-------------------------------------------------------
[1] "Total number of stations: 3"
-------------------------------------------------------
[1] "Number of operational stations: 3"
-------------------------------------------------------
[1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 128"
-------------------------------------------------------
[1] "Calendar days with cameras set up (operational or not): 131"
-------------------------------------------------------
[1] "Calendar days with cameras set up and active: 131"
-------------------------------------------------------
[1] "Calendar days with cameras set up but inactive: 0"
-------------------------------------------------------
[1] "total trapping period: 2009-04-02 - 2009-05-17"
-------------------------------------------------------
[1] "Total number of stations: 3"
-------------------------------------------------------
[1] "Number of operational stations: 3"
-------------------------------------------------------
[1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 128"
-------------------------------------------------------
[1] "Calendar days with cameras set up (operational or not): 131"
-------------------------------------------------------
[1] "Calendar days with cameras set up and active: 131"
-------------------------------------------------------
[1] "Calendar days with cameras set up but inactive: 0"
-------------------------------------------------------
[1] "total trapping period: 2009-04-02 - 2009-05-17"
-------------------------------------------------------
[1] "Total number of stations: 3"
-------------------------------------------------------
[1] "Number of operational stations: 3"
-------------------------------------------------------
[1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 122.5"
-------------------------------------------------------
[1] "Calendar days with cameras set up (operational or not): 131"
-------------------------------------------------------
[1] "Calendar days with cameras set up and active: 125"
-------------------------------------------------------
[1] "Calendar days with cameras set up but inactive: 6"
-------------------------------------------------------
[1] "total trapping period: 2009-04-02 - 2009-05-17"
adding: surveyReport_2026-04-12/CTtable.csv (deflated 47%)
adding: surveyReport_2026-04-12/activity/activity_density_EGY_2026-04-12.png (deflated 6%)
adding: surveyReport_2026-04-12/activity/activity_density_MNE_2026-04-12.png (deflated 11%)
adding: surveyReport_2026-04-12/activity/activity_density_PBE_2026-04-12.png (deflated 7%)
adding: surveyReport_2026-04-12/activity/activity_density_TRA_2026-04-12.png (deflated 6%)
adding: surveyReport_2026-04-12/activity/activity_density_VTA_2026-04-12.png (deflated 7%)
adding: surveyReport_2026-04-12/detectionMaps/Presence_EGY_2026-04-12.png (deflated 21%)
adding: surveyReport_2026-04-12/detectionMaps/Presence_MNE_2026-04-12.png (deflated 20%)
adding: surveyReport_2026-04-12/detectionMaps/Presence_PBE_2026-04-12.png (deflated 19%)
adding: surveyReport_2026-04-12/detectionMaps/Presence_TRA_2026-04-12.png (deflated 20%)
adding: surveyReport_2026-04-12/detectionMaps/Presence_VTA_2026-04-12.png (deflated 20%)
adding: surveyReport_2026-04-12/detectionMaps/n_Species_2026-04-12.png (deflated 18%)
adding: surveyReport_2026-04-12/readme.txt (deflated 67%)
adding: surveyReport_2026-04-12/recordTable.csv (deflated 83%)
adding: surveyReport_2026-04-12/scripts/camtrapR_scripts.R (deflated 70%)
adding: surveyReport_2026-04-12/surveyReport/events_by_species.csv (deflated 30%)
adding: surveyReport_2026-04-12/surveyReport/events_by_station.csv (deflated 54%)
adding: surveyReport_2026-04-12/surveyReport/events_by_station2.csv (deflated 65%)
adding: surveyReport_2026-04-12/surveyReport/species_by_station.csv (deflated 30%)
adding: surveyReport_2026-04-12/surveyReport/survey_dates.csv (deflated 55%)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 519 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-speciesAccum.R:36:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-speciesAccum.R:68:5'): it produces a valid iNEXT object with x_unit = 'survey_day' ──
Error in `yi[i]:(nT - 1)`: NA/NaN argument
Backtrace:
▆
1. └─camtrapR::speciesAccum(...) at test-speciesAccum.R:68:5
2. └─iNEXT::iNEXT(...)
3. └─iNEXT:::AsyD(...)
4. └─base::lapply(...)
5. └─iNEXT (local) FUN(X[[i]], ...)
6. ├─base::apply(...)
7. └─base::apply(...)
8. └─iNEXT (local) FUN(newX[, i], ...)
9. └─iNEXT:::Diversity_profile.inc(yb, q)
10. └─base::sapply(c(1:length(yi)), function(i) delta(i))
11. └─base::lapply(X = X, FUN = FUN, ...)
12. └─iNEXT (local) FUN(X[[i]], ...)
13. └─iNEXT (local) delta(i)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 519 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.0.3
Check: installed package size
Result: NOTE
installed size is 10.9Mb
sub-directories of 1Mb or more:
R 2.1Mb
doc 4.0Mb
pictures 4.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64