Last updated on 2026-08-01 12:51:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.1 | 7.19 | 271.32 | 278.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 5.49 | 163.76 | 169.25 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 12.00 | 431.37 | 443.37 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 171.68 | OK | |||
| r-devel-windows-x86_64 | 3.0.1 | 11.00 | 287.00 | 298.00 | OK | |
| r-patched-linux-x86_64 | 3.0.1 | 6.95 | 263.57 | 270.52 | OK | |
| r-release-linux-x86_64 | 3.0.1 | 7.10 | 136.88 | 143.98 | ERROR | |
| r-release-macos-arm64 | 3.0.1 | 2.00 | 109.00 | 111.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 5.00 | 310.00 | 315.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 11.00 | 298.00 | 309.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | 2.00 | 102.00 | 104.00 | OK | |
| r-oldrel-macos-x86_64 | 3.0.1 | 5.00 | 279.00 | 284.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 14.00 | 440.00 | 454.00 | OK |
Version: 3.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp08IKTb’ ‘~/tmp/scratch/Rtmp0Adcg4’
‘~/tmp/scratch/Rtmp0HbjY9’ ‘~/tmp/scratch/Rtmp1OeSvd’
‘~/tmp/scratch/Rtmp1msoNb’ ‘~/tmp/scratch/Rtmp36Rurv’
‘~/tmp/scratch/Rtmp3fUpeh’ ‘~/tmp/scratch/Rtmp4LSQJx’
‘~/tmp/scratch/Rtmp4gnUOT’ ‘~/tmp/scratch/Rtmp54yTAH’
‘~/tmp/scratch/Rtmp5z6MfT’ ‘~/tmp/scratch/Rtmp6AIitI’
‘~/tmp/scratch/Rtmp6FTP6u’ ‘~/tmp/scratch/Rtmp8BE1I6’
‘~/tmp/scratch/Rtmp8IOsZo’ ‘~/tmp/scratch/Rtmp8Mgnj7’
‘~/tmp/scratch/Rtmp8Xj2IO’ ‘~/tmp/scratch/Rtmp8ocsT1’
‘~/tmp/scratch/Rtmp97l1tF’ ‘~/tmp/scratch/Rtmp9HSVmE’
‘~/tmp/scratch/Rtmp9lq2M0’ ‘~/tmp/scratch/Rtmp9mSMlp’
‘~/tmp/scratch/Rtmp9rOs3X’ ‘~/tmp/scratch/RtmpAAk0U2’
‘~/tmp/scratch/RtmpAHmf97’ ‘~/tmp/scratch/RtmpAOA05P’
‘~/tmp/scratch/RtmpAjGCpl’ ‘~/tmp/scratch/RtmpAzuQpl’
‘~/tmp/scratch/RtmpBC2JBV’ ‘~/tmp/scratch/RtmpBWCo8D’
‘~/tmp/scratch/RtmpBka2wP’ ‘~/tmp/scratch/RtmpCR6Hx7’
‘~/tmp/scratch/RtmpCy0glI’ ‘~/tmp/scratch/RtmpD4YdT0’
‘~/tmp/scratch/RtmpD4gqvE’ ‘~/tmp/scratch/RtmpDOLvqC’
‘~/tmp/scratch/RtmpEL2LHB’ ‘~/tmp/scratch/RtmpFMdukx’
‘~/tmp/scratch/RtmpG3OKqP’ ‘~/tmp/scratch/RtmpGKXynw’
‘~/tmp/scratch/RtmpGlTgG9’ ‘~/tmp/scratch/RtmpH1sAvh’
‘~/tmp/scratch/RtmpHtWwo0’ ‘~/tmp/scratch/RtmpHzAr8T’
‘~/tmp/scratch/RtmpIJvc4F’ ‘~/tmp/scratch/RtmpIQC2Xf’
‘~/tmp/scratch/RtmpJNB7uq’ ‘~/tmp/scratch/RtmpJTPKeC’
‘~/tmp/scratch/RtmpJWuXtG’ ‘~/tmp/scratch/RtmpJodZ5y’
‘~/tmp/scratch/RtmpKMKFQP’ ‘~/tmp/scratch/RtmpKbxRCh’
‘~/tmp/scratch/RtmpL0KXcu’ ‘~/tmp/scratch/RtmpLED6Oe’
‘~/tmp/scratch/RtmpLPyvK4’ ‘~/tmp/scratch/RtmpMYyN4z’
‘~/tmp/scratch/RtmpMahjb7’ ‘~/tmp/scratch/RtmpNGXjNl’
‘~/tmp/scratch/RtmpNj0tIj’ ‘~/tmp/scratch/RtmpOAGZMK’
‘~/tmp/scratch/RtmpOK7z83’ ‘~/tmp/scratch/RtmpRO4kdh’
‘~/tmp/scratch/RtmpRQ28Jr’ ‘~/tmp/scratch/RtmpRanYSS’
‘~/tmp/scratch/RtmpRrrgG2’ ‘~/tmp/scratch/RtmpS4AAte’
‘~/tmp/scratch/RtmpS7EtPc’ ‘~/tmp/scratch/RtmpSKZ68D’
‘~/tmp/scratch/RtmpSyTZqU’ ‘~/tmp/scratch/RtmpTZfYsr’
‘~/tmp/scratch/RtmpTpcGXO’ ‘~/tmp/scratch/RtmpUAX4fi’
‘~/tmp/scratch/RtmpUtm3zO’ ‘~/tmp/scratch/RtmpV1muzV’
‘~/tmp/scratch/RtmpVAGgB1’ ‘~/tmp/scratch/RtmpVtyQ2M’
‘~/tmp/scratch/RtmpW0yECL’ ‘~/tmp/scratch/RtmpWKKbuD’
‘~/tmp/scratch/RtmpWN5vvh’ ‘~/tmp/scratch/RtmpWptKmY’
‘~/tmp/scratch/RtmpXEo0jy’ ‘~/tmp/scratch/RtmpXJ5d2F’
‘~/tmp/scratch/RtmpYfessv’ ‘~/tmp/scratch/RtmpYlTOLZ’
‘~/tmp/scratch/RtmpYti414’ ‘~/tmp/scratch/RtmpZ4NuIV’
‘~/tmp/scratch/RtmpZ5QXqB’ ‘~/tmp/scratch/RtmpZGshYP’
‘~/tmp/scratch/RtmpZsTS8Q’ ‘~/tmp/scratch/Rtmpa6BhBj’
‘~/tmp/scratch/RtmpaMxFMZ’ ‘~/tmp/scratch/RtmpaYXLAP’
‘~/tmp/scratch/RtmpbZ1oUt’ ‘~/tmp/scratch/RtmpbnbObo’
‘~/tmp/scratch/RtmpcAxBcG’ ‘~/tmp/scratch/RtmpcBm596’
‘~/tmp/scratch/RtmpcOZ1P3’ ‘~/tmp/scratch/RtmpdkyyyV’
‘~/tmp/scratch/RtmpdzkVog’ ‘~/tmp/scratch/RtmpeF4xLQ’
‘~/tmp/scratch/RtmpeULQPp’ ‘~/tmp/scratch/RtmpedNKyr’
‘~/tmp/scratch/RtmpfYX7tn’ ‘~/tmp/scratch/RtmpfaanND’
‘~/tmp/scratch/RtmpfmKCGc’ ‘~/tmp/scratch/Rtmpfud0dS’
‘~/tmp/scratch/RtmpgJdE2w’ ‘~/tmp/scratch/RtmphT9YN5’
‘~/tmp/scratch/RtmphabWjw’ ‘~/tmp/scratch/RtmphrFqy4’
‘~/tmp/scratch/RtmpiK07Og’ ‘~/tmp/scratch/RtmpiQxfLM’
‘~/tmp/scratch/RtmpiVWNJ5’ ‘~/tmp/scratch/Rtmpilkq84’
‘~/tmp/scratch/RtmpjeU1Qv’ ‘~/tmp/scratch/RtmpjkbNxz’
‘~/tmp/scratch/RtmpjlEYmh’ ‘~/tmp/scratch/Rtmpl3ByPL’
‘~/tmp/scratch/RtmplMwoDm’ ‘~/tmp/scratch/RtmpmTQelY’
‘~/tmp/scratch/RtmpmlcLDH’ ‘~/tmp/scratch/RtmpmoW1Eq’
‘~/tmp/scratch/RtmpmssI3e’ ‘~/tmp/scratch/Rtmpn8BBs7’
‘~/tmp/scratch/RtmpnYD1AQ’ ‘~/tmp/scratch/RtmpnhIQ5m’
‘~/tmp/scratch/RtmpnlHjpl’ ‘~/tmp/scratch/RtmpnrD8jP’
‘~/tmp/scratch/Rtmpo8TFaV’ ‘~/tmp/scratch/RtmpoBxiPT’
‘~/tmp/scratch/Rtmpod4auS’ ‘~/tmp/scratch/Rtmpouhy5w’
‘~/tmp/scratch/RtmppcWsYn’ ‘~/tmp/scratch/Rtmpqa76AS’
‘~/tmp/scratch/Rtmpqj43lh’ ‘~/tmp/scratch/RtmpqyNVQ7’
‘~/tmp/scratch/RtmpsGP8zd’ ‘~/tmp/scratch/RtmpsIXtLH’
‘~/tmp/scratch/Rtmpss9RVA’ ‘~/tmp/scratch/Rtmpssrdrq’
‘~/tmp/scratch/Rtmpsu05Ez’ ‘~/tmp/scratch/RtmpsuTLsh’
‘~/tmp/scratch/RtmptwXUH6’ ‘~/tmp/scratch/Rtmpu1VfxQ’
‘~/tmp/scratch/RtmpuAQl06’ ‘~/tmp/scratch/RtmpuBsbdz’
‘~/tmp/scratch/RtmpuGQsro’ ‘~/tmp/scratch/RtmpuUMzRf’
‘~/tmp/scratch/RtmpulkUt5’ ‘~/tmp/scratch/RtmpuqTViq’
‘~/tmp/scratch/RtmpuvAJHg’ ‘~/tmp/scratch/RtmpvxZuNW’
‘~/tmp/scratch/RtmpwEA6zC’ ‘~/tmp/scratch/RtmpwEbI4H’
‘~/tmp/scratch/RtmpwPgcM7’ ‘~/tmp/scratch/RtmpwXrMDr’
‘~/tmp/scratch/Rtmpx3q17p’ ‘~/tmp/scratch/RtmpxLXN6m’
‘~/tmp/scratch/RtmpxcCdB2’ ‘~/tmp/scratch/Rtmpxs96e5’
‘~/tmp/scratch/RtmpyJm3tW’ ‘~/tmp/scratch/RtmpynuvLs’
‘~/tmp/scratch/RtmpyxHZ6i’ ‘~/tmp/scratch/RtmpzKUSpu’
‘~/tmp/scratch/aryIrEGE’ ‘~/tmp/scratch/ccEbLwad.s’
‘~/tmp/scratch/xvfb-run.1QK5au’ ‘~/tmp/scratch/xvfb-run.2ElNuK’
‘~/tmp/scratch/xvfb-run.3bdHGd’ ‘~/tmp/scratch/xvfb-run.3n2jr5’
‘~/tmp/scratch/xvfb-run.3r5BjP’ ‘~/tmp/scratch/xvfb-run.3yoNXO’
‘~/tmp/scratch/xvfb-run.4psh8S’ ‘~/tmp/scratch/xvfb-run.6Fh5Jg’
‘~/tmp/scratch/xvfb-run.7s0ePT’ ‘~/tmp/scratch/xvfb-run.8aNfzG’
‘~/tmp/scratch/xvfb-run.8edidq’ ‘~/tmp/scratch/xvfb-run.BjusI3’
‘~/tmp/scratch/xvfb-run.BnJn5c’ ‘~/tmp/scratch/xvfb-run.Bx4cgl’
‘~/tmp/scratch/xvfb-run.Ci6z4X’ ‘~/tmp/scratch/xvfb-run.Cp6zRy’
‘~/tmp/scratch/xvfb-run.D79AT2’ ‘~/tmp/scratch/xvfb-run.DKHrHL’
‘~/tmp/scratch/xvfb-run.HZMmWv’ ‘~/tmp/scratch/xvfb-run.Jqs81J’
‘~/tmp/scratch/xvfb-run.JuSARq’ ‘~/tmp/scratch/xvfb-run.Lz3X0z’
‘~/tmp/scratch/xvfb-run.MC1Pa8’ ‘~/tmp/scratch/xvfb-run.MQMkXK’
‘~/tmp/scratch/xvfb-run.NZJa0L’ ‘~/tmp/scratch/xvfb-run.OFSmJt’
‘~/tmp/scratch/xvfb-run.OxAKLE’ ‘~/tmp/scratch/xvfb-run.PhNss8’
‘~/tmp/scratch/xvfb-run.SFubeT’ ‘~/tmp/scratch/xvfb-run.SQlp0B’
‘~/tmp/scratch/xvfb-run.UBOEFt’ ‘~/tmp/scratch/xvfb-run.UGdwqR’
‘~/tmp/scratch/xvfb-run.VYs3Iw’ ‘~/tmp/scratch/xvfb-run.Vhnc4k’
‘~/tmp/scratch/xvfb-run.WOCDQK’ ‘~/tmp/scratch/xvfb-run.YIZlJO’
‘~/tmp/scratch/xvfb-run.YgYfhV’ ‘~/tmp/scratch/xvfb-run.ZMF832’
‘~/tmp/scratch/xvfb-run.Zgo8DM’ ‘~/tmp/scratch/xvfb-run.aXYkRb’
‘~/tmp/scratch/xvfb-run.b8ee6j’ ‘~/tmp/scratch/xvfb-run.bIOyyC’
‘~/tmp/scratch/xvfb-run.bTLRi3’ ‘~/tmp/scratch/xvfb-run.d0Eqn9’
‘~/tmp/scratch/xvfb-run.d2Ktfh’ ‘~/tmp/scratch/xvfb-run.eAVb29’
‘~/tmp/scratch/xvfb-run.fNtrhd’ ‘~/tmp/scratch/xvfb-run.frFWTT’
‘~/tmp/scratch/xvfb-run.ifEw1e’ ‘~/tmp/scratch/xvfb-run.ipFeZa’
‘~/tmp/scratch/xvfb-run.kRsBA5’ ‘~/tmp/scratch/xvfb-run.ka1PVg’
‘~/tmp/scratch/xvfb-run.lJQIiZ’ ‘~/tmp/scratch/xvfb-run.mSLk0U’
‘~/tmp/scratch/xvfb-run.nVOzDv’ ‘~/tmp/scratch/xvfb-run.ngMvQT’
‘~/tmp/scratch/xvfb-run.oFNNLH’ ‘~/tmp/scratch/xvfb-run.r0EBXP’
‘~/tmp/scratch/xvfb-run.rIxLdi’ ‘~/tmp/scratch/xvfb-run.rsOFVs’
‘~/tmp/scratch/xvfb-run.s1NUBf’ ‘~/tmp/scratch/xvfb-run.s3w54R’
‘~/tmp/scratch/xvfb-run.sRmeT1’ ‘~/tmp/scratch/xvfb-run.t26a5N’
‘~/tmp/scratch/xvfb-run.tVsBi1’ ‘~/tmp/scratch/xvfb-run.u4ekLx’
‘~/tmp/scratch/xvfb-run.usl54o’ ‘~/tmp/scratch/xvfb-run.wAX76F’
‘~/tmp/scratch/xvfb-run.woykfL’ ‘~/tmp/scratch/xvfb-run.wq3pqV’
‘~/tmp/scratch/xvfb-run.x6Bc3h’ ‘~/tmp/scratch/xvfb-run.xAS84D’
‘~/tmp/scratch/xvfb-run.xcoiWG’ ‘~/tmp/scratch/xvfb-run.z8V1M6’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rPDBapi-structural-bioinformatics.Rmd’ using rmarkdown
Quitting from rPDBapi-structural-bioinformatics.Rmd:1175-1197 [query-search-variants]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
---
Backtrace:
▆
1. └─rPDBapi::query_search(search_term = "X-RAY DIFFRACTION", query_type = "ExpTypeQuery")
2. └─rPDBapi:::rpdbapi_abort(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rPDBapi-structural-bioinformatics.Rmd' failed with diagnostics:
All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
--- failed re-building ‘rPDBapi-structural-bioinformatics.Rmd’
SUMMARY: processing the following file failed:
‘rPDBapi-structural-bioinformatics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64