Last updated on 2024-06-07 12:58:24 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| bpgmm | 13 | |
| cmmr | 1 | 12 |
Current CRAN status: NOTE: 13
Version: 1.0.9
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.9
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
libs 5.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 12
Version: 0.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘cmmr-Ex.R’ failed
The error most likely occurred in:
> ### Name: advanced_batch_search
> ### Title: Encapsulation of CEU Mass Mediator advanced batch search API.
> ### Aliases: advanced_batch_search
>
> ### ** Examples
>
> df <- advanced_batch_search(
+ cmm_url = paste0(
+ 'http://ceumass.eps.uspceu.es/mediator/api/v3/',
+ 'advancedbatch'),
+ chemical_alphabet = 'all',
+ modifiers_type = 'none',
+ metabolites_type = 'all-except-peptides',
+ databases = '["hmdb"]',
+ masses_mode = 'mz',
+ ion_mode = 'positive',
+ adducts = '["all"]',
+ deuterium = 'false',
+ tolerance = '7.5',
+ tolerance_mode = 'ppm',
+ masses = '[400.3432, 288.2174]',
+ all_masses = '[]',
+ retention_times = '[18.842525, 4.021555]',
+ all_retention_times = '[]',
+ composite_spectra = paste0(
+ '[[{ "mz": 400.3432, "intensity": 307034.88 }, ',
+ '{ "mz": 311.20145, "intensity": 400.03336 }]]'
+ ))
Using the CEU Mass Mediator server API.
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was reached: [ceumass.eps.uspceu.es] Resolving timed out after 10007 milliseconds
Calls: advanced_batch_search ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
Flavor: r-release-macos-x86_64