package org.biojava.bio.structure.domain.pdp;

public class PDPParameters {
	public static final int MAXLEN = 3200;
	public static final int MAXDOM = 30;
	public static final int MAX_CUTS = 80;
	public static final int MAXSIZE = 350;
	public static final int MIN_DOMAIN_LENGTH = 35;
	public static final int ENDS = 12 ;
	public static final int ENDSEND = 9;
	public static final float RG1 = 1.0f;
	public static final float RG  = 0.0f;
	public static final float TD1 = 40.f;
	public static final float TD  = 25.f;
	public static final float DBL = .05f;
	public static final int MAXCONT = 900;
	
	public static final float CUT_OFF_VALUE=.50f; /* decide to cut */
	public static final float CUT_OFF_VALUE1=.29f; /* decide to combine */
	public static final float CUT_OFF_VALUE2=.44f; /* decide to double cut */
	public static final float CUT_OFF_VALUE1S=.19f; /* decide to combine small domains */
	public static final float CUT_OFF_VALUE1M=.21f; /* decide to combine medium domains */

	
}
